Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.5e-39 164.5 81 100.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.5e-13 78.6 56 66.1
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.3e-13 78.2 56 66.1
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.3e-13 78.2 56 66.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.3e-13 78.2 56 66.1
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 4.3e-13 77.8 56 64.3
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 4.3e-13 77.8 56 64.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.3e-13 77.8 56 64.3
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.6e-13 77.4 56 66.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 5.6e-13 77.4 56 66.1
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 5.6e-13 77.4 56 66.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 5.6e-13 77.4 56 66.1
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.3e-13 77.0 56 66.1
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 7.3e-13 77.0 56 64.3
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 9.5e-13 76.6 56 64.3
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 9.5e-13 76.6 56 66.1
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 9.5e-13 76.6 56 64.3
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.5e-13 76.6 56 64.3
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 9.5e-13 76.6 56 64.3
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 9.5e-13 76.6 56 64.3
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.2e-12 76.3 56 66.1
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-12 76.3 56 62.5
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-12 76.3 56 62.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.2e-12 76.3 56 62.5
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.6e-12 75.9 56 62.5
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.6e-12 75.9 56 64.3
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.6e-12 75.9 56 64.3
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.6e-12 75.9 56 66.1
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 62.5
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 62.5
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 64.3
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.1e-12 75.5 56 62.5
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.8e-12 75.1 56 62.5
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.8e-12 75.1 56 64.3
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.8e-12 75.1 56 62.5
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 3.6e-12 74.7 56 62.5
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 3.6e-12 74.7 56 62.5
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 3.6e-12 74.7 56 60.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.6e-12 74.7 56 64.3
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.6e-12 74.7 56 64.3
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.7e-12 74.3 56 60.7
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.7e-12 74.3 56 62.5
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.7e-12 74.3 56 62.5
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 60.7
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 62.5
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 62.5
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 62.5
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 60.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 60.7
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 6.2e-12 73.9 56 60.7
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 8.1e-12 73.6 56 60.7
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 8.1e-12 73.6 56 60.7
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 8.1e-12 73.6 56 60.7
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 8.1e-12 73.6 56 60.7
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 8.1e-12 73.6 56 60.7
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 8.1e-12 73.6 56 62.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 58.9
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 60.7
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 62.5
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 60.7
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 60.7
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 60.7
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 58.9
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.1e-11 73.2 56 60.7
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 62.5
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 60.7
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 60.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 60.7
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 60.7
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 60.7
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.4e-11 72.8 56 62.5
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.4e-11 72.8 77 53.2
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.8e-11 72.4 56 60.7
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.8e-11 72.4 56 64.3
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.8e-11 72.4 56 60.7
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 1.8e-11 72.4 56 60.7
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.3e-11 72.0 56 62.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.3e-11 72.0 56 62.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 2.3e-11 72.0 56 62.5
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.3e-11 72.0 56 60.7
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.3e-11 72.0 56 58.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.1e-11 71.6 55 60.0
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 4.0e-11 71.2 58 58.6
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 4.0e-11 71.2 56 57.1
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.0e-11 71.2 56 60.7
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.0e-11 71.2 56 57.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.2e-11 70.9 56 60.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.2e-11 70.9 56 58.9
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 6.8e-11 70.5 56 58.9
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 6.8e-11 70.5 56 60.7
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 6.8e-11 70.5 56 60.7
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 6.8e-11 70.5 56 60.7
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 8.9e-11 70.1 56 58.9
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 8.9e-11 70.1 56 57.1
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 8.9e-11 70.1 56 58.9
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 8.9e-11 70.1 56 58.9
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 8.9e-11 70.1 56 58.9
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.2e-10 69.7 56 58.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.2e-10 69.7 56 60.7
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.5e-10 69.3 58 56.9
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.0e-10 68.9 58 56.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 2.6e-10 68.6 56 57.1
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 2.6e-10 68.6 57 54.4
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 2.6e-10 68.6 56 55.4
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.4e-10 68.2 56 57.1
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.4e-10 67.8 56 57.1
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.4e-10 67.8 54 57.4
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.4e-10 67.8 76 46.1
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.3e-09 66.2 56 57.1
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.7e-09 65.9 56 55.4
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.7e-09 65.9 57 52.6
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.2e-09 65.5 53 54.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.2e-09 65.5 53 54.7
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.9e-09 64.3 56 55.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 6.4e-09 63.9 55 60.0
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.1e-08 63.2 49 55.1
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.4e-08 62.8 53 52.8
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.2e-08 61.6 56 51.8
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 7.1e-08 60.5 64 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 3.0e-06 55.1 49 49.0
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 5.1e-06 54.3 57 50.9


User provided reference genes

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