Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23909 Nelumbo nucifera HOM05D007515 ORTHO05D009374 1.3e-65 253.1 137 100.0
Atru.chr1.1654 Acer truncatum HOM05D007515 ORTHO05D009374 2.9e-30 135.6 136 56.6
Ciclev10013056m.g Citrus clementina HOM05D007515 ORTHO05D009374 8.5e-30 134.0 136 58.1
RcHm_v2.0_Chr4g0422841 Rosa chinensis HOM05D007515 ORTHO05D009374 6.1e-28 127.9 136 54.4
Rhsim09G0050100 Rhododendron simsii HOM05D007515 ORTHO05D009374 1.4e-27 126.7 139 55.4
TAR622G1055 Trochodendron aralioides HOM05D007515 ORTHO05D009374 2.3e-27 125.9 135 57.0
GSVIVG01031005001 Vitis vinifera HOM05D007515 ORTHO05D009374 2.0e-26 122.9 142 55.6
Rhsim08G0082900 Rhododendron simsii HOM05D007515 ORTHO05D009374 4.8e-25 118.2 143 53.1
TAR622G0795 Trochodendron aralioides HOM05D007515 ORTHO05D009374 6.3e-25 117.9 122 56.6
Aqoxy3G00240 Aquilegia oxysepala HOM05D007515 ORTHO05D009374 1.8e-24 116.3 136 55.1
Actinidia15892 Actinidia chinensis HOM05D007515 ORTHO05D009374 2.4e-24 115.9 136 51.5
MBI16_g28238_MAGBIO Magnolia biondii HOM05D007515 ORTHO05D009374 3.1e-24 115.5 122 56.6
FvH4_4g18360 Fragaria vesca HOM05D007515 ORTHO05D009374 9.1e-24 114.0 136 50.0
CiPaw.03G063100 Carya illinoinensis HOM05D007515 ORTHO05D009374 1.6e-23 113.2 130 53.1
MD09G1254600 Malus domestica HOM05D007515 ORTHO05D009374 1.3e-22 110.2 139 50.4
Gohir.D11G170400 Gossypium hirsutum HOM05D007515 ORTHO05D009374 1.7e-22 109.8 137 52.6
Gorai.007G182300 Gossypium raimondii HOM05D007515 ORTHO05D009374 1.7e-22 109.8 137 52.6
Thecc.04G131400 Theobroma cacao HOM05D007515 ORTHO05D009374 3.8e-22 108.6 129 51.2
Duzib138G0915 Durio zibethinus HOM05D007515 ORTHO05D009374 6.5e-22 107.8 138 50.7
Hma1.2p1_0075F.1_g039300 Hydrangea macrophylla HOM05D007515 ORTHO05D009374 6.5e-22 107.8 135 51.9
Gohir.A11G164100 Gossypium hirsutum HOM05D007515 ORTHO05D009374 1.5e-21 106.7 139 50.4
Lalb_Chr02g0158161 Lupinus albus HOM05D007515 ORTHO05D009374 4.2e-21 105.1 129 49.6
FAN12G0861 Fragaria x ananassa HOM05D007515 ORTHO05D009374 5.5e-21 104.8 149 45.6
FAN12G1919 Fragaria x ananassa HOM05D007515 ORTHO05D009374 5.5e-21 104.8 149 45.6
VMungo0464G1380 Vigna mungo HOM05D007515 ORTHO05D009374 5.5e-21 104.8 138 49.3
QL02p050960 Quercus lobata HOM05D007515 ORTHO05D009374 9.4e-21 104.0 138 47.1
QL12p016476 Quercus lobata HOM05D007515 ORTHO05D009374 9.4e-21 104.0 138 47.1
Phvul.004G062000 Phaseolus vulgaris HOM05D007515 ORTHO05D009374 1.2e-20 103.6 138 48.6
Potri.017G116500 Populus trichocarpa HOM05D007515 ORTHO05D009374 2.7e-20 102.4 143 49.7
Nitab4.5_0007990g0020 Nicotiana tabacum HOM05D007515 ORTHO05D009374 4.7e-20 101.7 138 48.6
Manes.02G070000 Manihot esculenta HOM05D007515 ORTHO05D009374 6.1e-20 101.3 138 50.0
Nitab4.5_0000912g0070 Nicotiana tabacum HOM05D007515 ORTHO05D009374 6.1e-20 101.3 138 47.1
CDE12G0697 Ceratophyllum demersum HOM05D007515 ORTHO05D009374 1.0e-19 100.5 134 46.3
Eucgr.J01508 Eucalyptus grandis HOM05D007515 ORTHO05D009374 3.0e-19 99.0 135 48.1
CDE06G2600 Ceratophyllum demersum HOM05D007515 ORTHO05D009374 5.2e-19 98.2 135 47.4
Haze_14170 Corylus avellana HOM05D007515 ORTHO05D009374 1.2e-18 97.1 127 51.2
PGR042G1312 Punica granatum HOM05D007515 ORTHO05D009374 1.2e-18 97.1 134 50.0
Solyc02g086170.3 Solanum lycopersicum HOM05D007515 ORTHO05D009374 3.4e-18 95.5 138 47.1
Hund16163 Selenicereus undatus HOM05D007515 ORTHO05D009374 4.4e-18 95.1 141 47.5
MSTRG.23581 Avicennia marina HOM05D007515 ORTHO05D009374 5.7e-18 94.7 148 45.9
Sopen02g030860 Solanum pennellii HOM05D007515 ORTHO05D009374 5.7e-18 94.7 139 48.2
PGSC0003DMG400026389 Solanum tuberosum HOM05D007515 ORTHO05D009374 9.7e-18 94.0 138 46.4
HanXRQChr14g0440481 Helianthus annuus HOM05D007515 ORTHO05D009374 3.7e-17 92.0 135 46.7
Lsat_1_v5_gn_2_79341 Lactuca sativa HOM05D007515 ORTHO05D009374 4.8e-17 91.7 140 47.1
MELO3C008145.2 Cucumis melo HOM05D007515 ORTHO05D009374 6.3e-17 91.3 137 46.7
Peaxi162Scf00394g00816 Petunia axillaris HOM05D007515 ORTHO05D009374 6.3e-17 91.3 136 45.6
Thhalv10014997m.g Eutrema salsugineum HOM05D007515 ORTHO05D009374 1.4e-16 90.1 137 44.5
Lj2g0024883 Lotus japonicus HOM05D007515 ORTHO05D009374 1.4e-16 90.1 137 46.0
TPR.G32460 Trifolium pratense HOM05D007515 ORTHO05D009374 1.4e-16 90.1 149 39.6
Cc07_g08700 Coffea canephora HOM05D007515 ORTHO05D009374 1.8e-16 89.7 139 46.0
Sp6g27980 Schrenkiella parvula HOM05D007515 ORTHO05D009374 1.8e-16 89.7 137 45.3
THA.LOC104827160 Tarenaya hassleriana HOM05D007515 ORTHO05D009374 2.4e-16 89.4 138 42.8
Carub.0006s1435 Capsella rubella HOM05D007515 ORTHO05D009374 3.1e-16 89.0 138 43.5
Medtr6g018800 Medicago truncatula HOM05D007515 ORTHO05D009374 3.1e-16 89.0 137 44.5
Aa31LG11G13450 Aethionema arabicum HOM05D007515 ORTHO05D009374 5.3e-16 88.2 137 43.1
Glyma.13G044900 Glycine max HOM05D007515 ORTHO05D009374 5.3e-16 88.2 138 42.8
AT5G16160 Arabidopsis thaliana HOM05D007515 ORTHO05D009374 3.5e-15 85.5 138 41.3
CsaV3_2G033760 Cucumis sativus L. HOM05D007515 ORTHO05D009374 5.9e-15 84.7 137 44.5
BcaC03g18471 Brassica carinata HOM05D007515 ORTHO05D009374 2.2e-14 82.8 134 41.8
BolC2t06740H Brassica oleracea HOM05D007515 ORTHO05D009374 2.2e-14 82.8 134 41.8
DCAR_025907 Daucus carota HOM05D007515 ORTHO05D009374 3.8e-14 82.0 136 41.9
CARHR197140 Cardamine hirsuta HOM05D007515 ORTHO05D009374 5.0e-14 81.6 137 40.1
Cfa007908 Carpinus fangiana HOM05D007515 ORTHO05D009374 8.5e-14 80.9 101 50.5
A02p03410 Brassica napus HOM05D007515 ORTHO05D009374 2.5e-13 79.3 137 41.6
C02p08170 Brassica napus HOM05D007515 ORTHO05D009374 2.5e-13 79.3 137 39.4
Migut.H00225 Erythranthe guttata HOM05D007515 ORTHO05D009374 3.2e-13 79.0 123 43.1
BcaNung02224 Brassica carinata HOM05D007515 ORTHO05D009374 7.2e-13 77.8 144 38.2
BraA02t05312Z Brassica rapa HOM05D007515 ORTHO05D009374 7.2e-13 77.8 134 41.8
HPP92_011524 Vanilla planifolia HOM05D007515 ORTHO05D009374 1.2e-12 77.0 137 39.4
Glyma.19G050400 Glycine max HOM05D007515 ORTHO05D009374 1.6e-12 76.6 138 41.3
Sabra17G0096400 Salix brachista HOM05D007515 ORTHO05D009374 1.6e-12 76.6 107 51.4
Os01g0689600 Oryza sativa ssp. japonica HOM05D007515 ORTHO05D009374 4.7e-12 75.1 133 39.1
Zm00001eb360590 Zea mays HOM05D007515 ORTHO05D009374 1.8e-11 73.2 134 38.1
unitig_736.g22559 Utricularia gibba HOM05D007515 ORTHO05D009374 2.3e-11 72.8 142 41.5
Oeu039735.1 Olea europaea HOM05D007515 ORTHO05D009374 3.0e-11 72.4 111 42.3
Cpa.g.sc170.54 Carica papaya HOM05D007515 ORTHO05D009374 6.8e-11 71.2 189 34.4
COL.COLO4_09352 Corchorus olitorius HOM05D007515 ORTHO05D009374 1.2e-10 70.5 101 47.5
ECA238G4180 Erigeron canadensis HOM05D007515 ORTHO05D009374 1.5e-10 70.1 142 40.8
Sed0014058 Sechium edule HOM05D007515 ORTHO05D009374 1.5e-10 70.1 133 39.8
Dinv34811 Davidia involucrata HOM05D007515 ORTHO05D009374 4.4e-10 68.6 111 45.0
Actinidia36332 Actinidia chinensis HOM05D007515 ORTHO05D009374 5.7e-10 68.2 95 45.3
arahy.Tifrunner.gnm1.ann1.TN7YSG Arachis hypogaea HOM05D007515 ORTHO05D009374 1.3e-09 67.0 116 39.7
arahy.Tifrunner.gnm1.ann1.70FVHQ Arachis hypogaea HOM05D007515 ORTHO05D009374 1.7e-09 66.6 116 39.7
Zm00001eb156280 Zea mays HOM05D007515 ORTHO05D009374 1.7e-09 66.6 139 35.3
SalBow3G4303 Salvia bowleyana HOM05D007515 ORTHO05D009374 4.8e-09 65.1 122 38.5
ClCG11G007840 Citrullus lanatus HOM05D007515 ORTHO05D009374 2.4e-08 62.8 95 45.3
ATR1125G068 Amborella trichopoda HOM05D007515 ORTHO05D009374 3.1e-08 62.4 95 48.4
Psat1g080920 Pisum sativum HOM05D007515 ORTHO05D009374 4.1e-08 62.0 134 36.6
SGA_v2.0_scaffold158G37447 Striga asiatica HOM05D007515 ORTHO05D009374 5.4e-08 61.6 141 37.6
AagrBONN_evm.TU.Sc2ySwM_344.185 Anthoceros agrestis HOM05D007515 ORTHO05D009374 9.1e-08 60.8 142 36.6
vmacro18070 Vaccinium macrocarpon HOM05D007515 ORTHO05D009374 3.5e-07 58.9 207 30.9
Prupe.3G144700 Prunus persica HOM05D007515 ORTHO05D009374 1.0e-06 57.4 94 38.3
Sc10g0001090 Simmondsia chinensis HOM05D007515 ORTHO05D009374 1.3e-06 57.0 122 41.0
SGA_v2.0_scaffold49G18111 Striga asiatica HOM05D007515 ORTHO05D009374 8.6e-06 54.3 127 37.8


User provided reference genes

Program Settings