Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23903 Nelumbo nucifera HOM05D007903 ORTHO05D009925 2.0e-103 379.0 185 100.0
TAR374G1449 Trochodendron aralioides HOM05D007903 ORTHO05D009925 1.1e-51 207.2 183 62.8
Aqoxy3G00252 Aquilegia oxysepala HOM05D007903 ORTHO05D009925 1.8e-38 163.3 176 55.1
CSS0015489 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 2.6e-37 159.5 178 52.8
Cfa015866 Carpinus fangiana HOM05D007903 ORTHO05D009925 3.7e-36 155.6 172 50.6
Haze_00633 Corylus avellana HOM05D007903 ORTHO05D009925 6.9e-35 151.4 172 50.6
Hma1.2p1_1875F.1_g306260 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 9.1e-35 151.0 177 50.3
CiPaw.05G239700 Carya illinoinensis HOM05D007903 ORTHO05D009925 3.4e-34 149.1 176 51.1
Potri.008G122700 Populus trichocarpa HOM05D007903 ORTHO05D009925 4.4e-29 132.1 173 45.7
Thecc.02G225400 Theobroma cacao HOM05D007903 ORTHO05D009925 1.3e-28 130.6 181 45.3
Potri.010G122600 Populus trichocarpa HOM05D007903 ORTHO05D009925 2.4e-27 126.3 173 45.1
Manes.14G104700 Manihot esculenta HOM05D007903 ORTHO05D009925 9.1e-27 124.4 173 44.5
PGSC0003DMG400006002 Solanum tuberosum HOM05D007903 ORTHO05D009925 1.2e-26 124.0 190 42.1
Hma1.2p1_2787F.1_g328510 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 7.7e-26 121.3 148 50.7
FAN12G2568 Fragaria x ananassa HOM05D007903 ORTHO05D009925 8.5e-25 117.9 178 40.4
Sabra10G0092700 Salix brachista HOM05D007903 ORTHO05D009925 8.5e-25 117.9 174 44.3
FvH4_4g27040 Fragaria vesca HOM05D007903 ORTHO05D009925 1.9e-24 116.7 179 40.8
FAN12G1984 Fragaria x ananassa HOM05D007903 ORTHO05D009925 1.9e-24 116.7 179 40.8
CAN.G25.18 Capsicum annuum HOM05D007903 ORTHO05D009925 3.2e-24 115.9 189 42.3
MD16G1040300 Malus domestica HOM05D007903 ORTHO05D009925 3.2e-24 115.9 176 45.5
Prupe.1G313800 Prunus persica HOM05D007903 ORTHO05D009925 4.2e-24 115.5 172 43.6
QL01p040711 Quercus lobata HOM05D007903 ORTHO05D009925 7.2e-24 114.8 149 49.0
Ciclev10017603m.g Citrus clementina HOM05D007903 ORTHO05D009925 1.2e-23 114.0 178 43.8
RcHm_v2.0_Chr4g0434841 Rosa chinensis HOM05D007903 ORTHO05D009925 1.2e-23 114.0 176 40.9
FAN22G0942 Fragaria x ananassa HOM05D007903 ORTHO05D009925 1.6e-23 113.6 181 40.3
CSS0009081 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 4.7e-23 112.1 164 45.1
TWI31G0067 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 6.1e-23 111.7 175 42.3
Gohir.A09G042700 Gossypium hirsutum HOM05D007903 ORTHO05D009925 2.3e-22 109.8 179 41.9
Sabra08G0093200 Salix brachista HOM05D007903 ORTHO05D009925 2.3e-22 109.8 159 42.1
FAN07G0160 Fragaria x ananassa HOM05D007903 ORTHO05D009925 3.0e-22 109.4 181 38.7
Duzib268G0450 Durio zibethinus HOM05D007903 ORTHO05D009925 5.2e-22 108.6 178 43.8
FAN17G2767 Fragaria x ananassa HOM05D007903 ORTHO05D009925 6.7e-22 108.2 181 39.8
MD13G1039400 Malus domestica HOM05D007903 ORTHO05D009925 6.7e-22 108.2 174 41.4
Oeu057730.1 Olea europaea HOM05D007903 ORTHO05D009925 9.7e-21 104.4 173 42.2
Solyc04g007360.1 Solanum lycopersicum HOM05D007903 ORTHO05D009925 2.2e-20 103.2 190 37.4
Gohir.D09G043400 Gossypium hirsutum HOM05D007903 ORTHO05D009925 2.8e-20 102.8 180 40.0
Gorai.006G050300 Gossypium raimondii HOM05D007903 ORTHO05D009925 2.8e-20 102.8 180 40.0
CsaV3_5G034450 Cucumis sativus L. HOM05D007903 ORTHO05D009925 1.1e-19 100.9 158 39.2
DCAR_030171 Daucus carota HOM05D007903 ORTHO05D009925 1.4e-19 100.5 178 38.2
PGR119G1971 Punica granatum HOM05D007903 ORTHO05D009925 2.4e-19 99.8 180 42.2
CSS0036148 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 5.3e-19 98.6 164 42.7
Lalb_Chr06g0165971 Lupinus albus HOM05D007903 ORTHO05D009925 1.6e-18 97.1 174 42.0
Sc04g0006190 Simmondsia chinensis HOM05D007903 ORTHO05D009925 7.7e-18 94.7 176 38.6
Lj5g0001705 Lotus japonicus HOM05D007903 ORTHO05D009925 3.8e-17 92.4 173 37.6
Sopen04g002420 Solanum pennellii HOM05D007903 ORTHO05D009925 1.5e-16 90.5 150 40.0
Migut.E00359 Erythranthe guttata HOM05D007903 ORTHO05D009925 2.7e-15 86.3 183 37.2
Sed0015064 Sechium edule HOM05D007903 ORTHO05D009925 2.7e-15 86.3 173 34.7
Carub.0002s1485 Capsella rubella HOM05D007903 ORTHO05D009925 6.1e-15 85.1 175 37.7
VMungo0720G0077 Vigna mungo HOM05D007903 ORTHO05D009925 6.1e-15 85.1 180 36.1
Peaxi162Scf00564g00039 Petunia axillaris HOM05D007903 ORTHO05D009925 2.3e-14 83.2 136 37.5
THA.LOC104821918 Tarenaya hassleriana HOM05D007903 ORTHO05D009925 3.0e-14 82.8 172 34.9
Sp5g23400 Schrenkiella parvula HOM05D007903 ORTHO05D009925 8.8e-14 81.3 177 35.6
CANSAT01G0431 Cannabis sativa HOM05D007903 ORTHO05D009925 2.6e-13 79.7 188 34.0
Thhalv10019802m.g Eutrema salsugineum HOM05D007903 ORTHO05D009925 2.6e-13 79.7 176 34.1
Glyma.20G117500 Glycine max HOM05D007903 ORTHO05D009925 3.4e-13 79.3 174 36.8
AT1G68350 Arabidopsis thaliana HOM05D007903 ORTHO05D009925 1.3e-12 77.4 175 34.3
ClCG05G022570 Citrullus lanatus HOM05D007903 ORTHO05D009925 2.2e-12 76.6 149 36.2
BcaB03g15412 Brassica carinata HOM05D007903 ORTHO05D009925 4.1e-11 72.4 173 32.4
BcaC08g45975 Brassica carinata HOM05D007903 ORTHO05D009925 7.0e-11 71.6 173 32.4
C06p37650 Brassica napus HOM05D007903 ORTHO05D009925 7.0e-11 71.6 173 32.4
BolC6t38868H Brassica oleracea HOM05D007903 ORTHO05D009925 7.0e-11 71.6 173 32.4
Phvul.007G029300 Phaseolus vulgaris HOM05D007903 ORTHO05D009925 1.6e-10 70.5 174 32.2
CARHR061060 Cardamine hirsuta HOM05D007903 ORTHO05D009925 2.7e-10 69.7 175 33.1
AL2G27200 Arabidopsis lyrata HOM05D007903 ORTHO05D009925 3.5e-10 69.3 181 32.6
Dinv31619 Davidia involucrata HOM05D007903 ORTHO05D009925 5.9e-10 68.6 174 34.5
Lsat_1_v5_gn_3_57941 Lactuca sativa HOM05D007903 ORTHO05D009925 7.7e-10 68.2 91 44.0
BraA02t06557Z Brassica rapa HOM05D007903 ORTHO05D009925 1.3e-09 67.4 173 31.2
BcaB05g24366 Brassica carinata HOM05D007903 ORTHO05D009925 6.5e-09 65.1 173 32.9
Eucgr.G02306 Eucalyptus grandis HOM05D007903 ORTHO05D009925 1.9e-08 63.5 128 36.7
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-07 60.8 210 29.0
Os01g0133200 Oryza sativa ssp. japonica HOM05D007903 ORTHO05D009925 1.2e-07 60.8 198 32.3
TWI79G1550 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 1.6e-07 60.5 129 36.4
COL.COLO4_08991 Corchorus olitorius HOM05D007903 ORTHO05D009925 3.6e-07 59.3 157 38.2
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 4.7e-07 58.9 201 30.3
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 8.0e-07 58.2 201 30.8
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.0e-06 57.8 153 36.6
ATR1125G087 Amborella trichopoda HOM05D007903 ORTHO05D009925 1.8e-06 57.0 182 30.8
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.8e-06 57.0 61 52.5
Cpa.g.sc65.47 Carica papaya HOM05D007903 ORTHO05D009925 2.3e-06 56.6 159 34.0
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.0e-06 56.2 200 30.5
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.0e-06 55.8 196 33.7
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.2e-06 55.5 191 30.4


User provided reference genes

Program Settings