Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.1e-135 485.7 247 100.0
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.4e-91 339.3 235 74.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 4.5e-90 335.1 247 70.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 6.1e-87 324.7 217 77.0
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.5e-85 320.1 196 81.1
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.7e-82 309.3 247 63.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.3e-81 306.2 247 64.8
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 6.6e-81 304.7 238 64.3
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.3e-80 302.4 246 64.6
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 4.2e-80 302.0 242 64.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.5e-80 300.8 246 63.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-79 300.4 244 63.5
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.4e-78 297.0 207 70.5
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.8e-78 296.6 211 70.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 8.9e-78 294.3 237 62.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.2e-77 293.9 235 67.7
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.0e-77 293.1 208 68.8
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 4.4e-77 292.0 237 65.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 9.8e-77 290.8 242 63.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.2e-76 289.7 243 62.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.2e-76 289.7 243 62.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.7e-76 288.9 243 62.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 4.9e-76 288.5 222 65.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 4.9e-76 288.5 246 63.0
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.4e-75 287.0 229 64.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.4e-75 287.0 208 70.2
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.8e-75 286.6 212 67.0
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.2e-75 285.8 231 65.4
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.0e-73 280.8 251 58.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.0e-73 280.8 208 67.3
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.9e-73 279.3 240 61.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.9e-73 279.3 241 60.2
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 6.6e-73 278.1 242 61.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-72 277.3 235 62.6
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.3e-72 275.8 207 64.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.3e-72 275.4 217 67.3
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.2e-71 273.9 246 61.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.6e-71 273.5 221 61.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.8e-71 272.7 237 61.2
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.6e-71 272.3 179 73.7
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 3.6e-71 272.3 243 57.6
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 4.7e-71 271.9 221 62.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 6.1e-71 271.6 243 58.0
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.4e-70 270.4 212 64.6
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.8e-70 270.0 237 57.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 2.3e-70 269.6 245 57.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 3.1e-70 269.2 181 72.4
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 8.9e-70 267.7 213 64.3
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 8.9e-70 267.7 213 64.3
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.2e-69 267.3 224 62.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.0e-69 266.5 240 57.9
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.6e-69 266.2 216 63.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.8e-69 265.0 233 60.9
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 7.5e-69 264.6 243 56.8
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 9.8e-69 264.2 216 63.4
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.3e-68 263.8 216 63.4
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.3e-68 263.8 216 63.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.7e-68 263.5 181 72.9
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-68 263.5 237 58.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.7e-68 263.5 178 73.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.7e-68 263.5 176 73.9
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.9e-68 262.7 224 62.1
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 4.9e-68 261.9 216 64.8
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.1e-67 260.8 221 58.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.9e-67 260.0 231 58.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.9e-67 260.0 232 58.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.4e-67 259.6 244 56.1
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.4e-67 258.5 182 69.2
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 5.4e-67 258.5 240 58.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.2e-66 257.3 178 71.3
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.6e-66 256.9 237 58.2
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.6e-66 256.9 237 58.2
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-66 256.9 213 61.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 2.0e-66 256.5 208 65.4
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.0e-66 256.5 258 54.3
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.7e-66 256.1 179 72.1
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 7.8e-66 254.6 210 62.9
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.0e-65 254.2 220 60.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.0e-65 254.2 189 66.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.0e-65 254.2 212 60.8
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.0e-65 254.2 247 55.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.3e-65 253.8 216 60.2
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.3e-65 253.8 231 58.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.3e-65 253.8 199 63.3
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-65 253.4 232 57.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 2.3e-65 253.1 203 65.5
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 3.0e-65 252.7 220 63.2
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 3.9e-65 252.3 262 55.7
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.0e-65 251.9 182 67.6
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.6e-65 251.5 187 65.8
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 8.6e-65 251.1 242 57.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.3e-64 248.8 247 55.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 5.6e-64 248.4 242 55.8
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.2e-63 247.3 180 66.1
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.6e-63 246.9 200 62.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 8.1e-63 244.6 229 58.5
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 8.1e-63 244.6 216 58.3
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.8e-62 243.4 246 55.7
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.0e-62 242.3 231 57.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.0e-61 240.0 220 60.5
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.6e-61 239.6 155 75.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.6e-61 239.6 150 79.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.4e-61 238.8 155 74.8
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.8e-61 238.4 206 56.8
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-60 237.3 174 69.5
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.4e-60 235.0 155 74.8
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.9e-59 233.4 153 74.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.2e-59 232.6 145 75.9
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 4.1e-59 232.3 147 76.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 9.2e-59 231.1 206 56.8
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.1e-58 229.9 173 64.2
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.3e-57 227.3 142 76.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.7e-57 226.9 207 59.9
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.0e-57 226.1 135 79.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.9e-57 225.7 150 72.0
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.5e-56 223.8 181 59.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.9e-56 223.4 181 59.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 9.5e-56 221.1 148 71.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.6e-55 219.2 181 58.6
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-54 216.9 194 55.7
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.3e-54 216.5 179 63.1
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 6.4e-52 208.4 162 63.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 6.4e-52 208.4 150 66.0
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.1e-50 203.4 200 54.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.5e-50 202.6 120 81.7
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-48 197.6 246 48.4
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.6e-47 193.7 189 53.4
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.1e-47 193.4 235 47.7
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 8.1e-47 191.4 142 63.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.8e-46 190.3 139 62.6
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 8.9e-46 188.0 143 65.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.2e-45 187.6 190 53.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.5e-45 187.2 142 62.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 3.4e-45 186.0 160 60.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.1e-43 181.0 177 57.6
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.7e-42 176.4 142 57.0
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 7.8e-42 174.9 169 54.4
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 5.6e-40 168.7 243 45.7
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.8e-36 156.0 196 43.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.4e-35 153.3 148 60.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.6e-32 141.4 172 49.4
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.6e-31 139.4 145 54.5
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 6.2e-31 138.7 129 56.6
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 4.2e-27 125.9 157 50.3
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.8e-22 110.5 79 64.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.9e-20 103.2 140 40.0
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 6.7e-17 92.0 131 35.9
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-16 91.3 147 35.4
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.1e-14 82.8 147 34.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 6.5e-12 75.5 152 30.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.2e-11 72.0 120 32.5
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.1e-10 70.5 83 50.6
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 7.9e-10 68.6 123 39.0
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.9e-10 68.6 72 45.8
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.3e-09 67.0 121 29.8
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.4e-08 62.0 156 28.8
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.8e-07 59.3 84 42.9


User provided reference genes

Program Settings