Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 3.4e-186 654.8 325 100.0
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 7.5e-109 397.9 332 64.5
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 9.8e-109 397.5 240 79.6
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 8.3e-108 394.4 257 72.8
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 7.0e-107 391.3 225 81.8
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 9.2e-107 391.0 257 72.4
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 4.5e-106 388.7 254 74.0
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 7.7e-106 387.9 225 80.4
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 7.7e-106 387.9 250 74.8
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.3e-105 387.1 230 78.3
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 8.6e-105 384.4 251 72.1
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.1e-104 384.0 268 69.0
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 1.9e-104 383.3 246 76.8
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.3e-104 382.5 255 73.3
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.3e-104 382.5 255 73.3
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 5.6e-104 381.7 251 72.1
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 9.5e-104 380.9 255 72.5
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 1.2e-103 380.6 223 78.0
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.6e-103 380.2 255 72.2
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 2.8e-103 379.4 221 78.7
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 3.6e-103 379.0 309 60.5
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 3.6e-103 379.0 252 71.0
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 3.6e-103 379.0 253 73.1
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 6.1e-103 378.3 223 77.6
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 8.0e-103 377.9 253 73.5
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 1.0e-102 377.5 255 71.4
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 1.8e-102 376.7 260 71.2
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.3e-102 376.3 229 75.5
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 3.0e-102 375.9 252 71.0
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 4.0e-102 375.6 255 71.4
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 5.2e-102 375.2 242 74.0
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 6.8e-102 374.8 223 78.9
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 6.8e-102 374.8 230 75.7
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 8.9e-102 374.4 314 62.4
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 8.9e-102 374.4 249 71.1
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.2e-101 374.0 327 60.6
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 4.4e-101 372.1 229 74.7
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 1.3e-100 370.5 242 72.3
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 1.7e-100 370.2 233 73.8
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 2.9e-100 369.4 309 61.2
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 2.9e-100 369.4 254 71.3
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 6.4e-100 368.2 223 75.3
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 1.8e-99 366.7 253 69.2
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 4.1e-99 365.5 253 69.2
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 4.1e-99 365.5 223 75.8
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 3.5e-98 362.5 254 68.1
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 3.5e-98 362.5 255 69.0
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 5.9e-98 361.7 234 74.8
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 7.8e-98 361.3 246 70.3
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.7e-97 360.1 259 68.0
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 2.3e-97 359.8 232 73.3
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 3.9e-97 359.0 230 73.0
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 5.0e-97 358.6 255 67.1
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 6.6e-97 358.2 246 67.5
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 1.1e-96 357.5 218 73.9
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 7.3e-96 354.8 252 68.7
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 9.5e-96 354.4 391 49.6
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 1.6e-95 353.6 219 72.1
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.4e-94 350.5 263 65.0
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 1.4e-94 350.5 231 70.1
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 5.2e-94 348.6 247 64.4
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.5e-93 347.1 246 66.3
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 1.5e-93 347.1 231 72.7
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 2.0e-93 346.7 316 57.0
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 2.6e-93 346.3 231 69.7
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 2.6e-93 346.3 231 69.7
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 2.6e-93 346.3 231 69.7
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 3.4e-93 345.9 225 69.8
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 4.4e-93 345.5 253 64.4
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 7.5e-93 344.7 252 65.5
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.3e-92 344.0 287 59.9
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 2.2e-92 343.2 252 65.1
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 2.4e-91 339.7 253 62.8
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 4.1e-91 339.0 223 70.9
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 4.1e-91 339.0 219 70.8
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 3.5e-90 335.9 251 62.9
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 1.1e-88 330.9 199 75.4
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 2.5e-88 329.7 224 68.3
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 4.3e-88 328.9 222 66.7
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.7e-81 307.0 255 59.2
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 1.5e-80 303.9 259 58.3
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 3.1e-78 296.2 223 64.6
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 4.1e-75 285.8 317 49.8
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 2.7e-74 283.1 193 71.5
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 8.6e-73 278.1 229 60.7
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.4e-70 270.0 204 62.3
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.4e-70 270.0 204 62.3
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 4.0e-70 269.2 168 74.4
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 8.9e-70 268.1 299 48.5
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.2e-69 267.7 199 62.8
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 2.2e-68 263.5 168 73.8
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 3.8e-68 262.7 250 48.4
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 1.2e-66 257.7 171 67.3
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 1.2e-66 257.7 155 75.5
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.1e-66 256.9 155 74.2
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 2.1e-66 256.9 155 75.5
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 1.9e-64 250.4 263 47.1
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 9.6e-64 248.1 226 59.7
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 9.6e-64 248.1 155 73.5
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 7.6e-61 238.4 223 52.0
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 2.8e-55 219.9 141 70.9
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 3.2e-51 206.5 121 80.2
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.0e-49 201.4 136 69.1
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 8.1e-47 191.8 168 58.9
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.1e-43 181.4 242 44.2
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.1e-43 181.4 242 44.2
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.6e-37 160.2 104 70.2
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 2.9e-36 156.8 231 36.4
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 8.5e-36 155.2 104 68.3
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 2.4e-30 137.1 136 50.7
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.1e-30 136.7 104 64.4
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 3.4e-29 133.3 92 68.5
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 8.2e-23 112.1 216 36.1
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 5.3e-22 109.4 269 30.1
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 1.1e-19 101.7 64 70.3
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.6e-18 96.7 85 57.6
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 1.6e-13 81.3 231 27.7


User provided reference genes

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