Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.3e-44 182.6 86 100.0
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.2e-19 97.1 171 36.3
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 3.7e-15 84.7 144 36.1
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 8.3e-15 83.6 138 37.0
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 1.1e-14 83.2 139 36.0
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.4e-14 82.8 138 36.2
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 2.4e-14 82.0 139 36.0
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.4e-14 82.0 145 35.2
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.1e-14 81.6 141 34.8
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.1e-14 81.6 151 35.8
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 3.1e-14 81.6 150 33.3
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 3.1e-14 81.6 145 34.5
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 4.1e-14 81.3 139 36.0
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 4.1e-14 81.3 146 34.9
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 5.4e-14 80.9 151 34.4
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 7.0e-14 80.5 145 34.5
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 9.1e-14 80.1 143 35.0
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 2.7e-13 78.6 145 33.8
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 2.7e-13 78.6 152 33.6
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.5e-13 78.2 88 46.6
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 4.5e-13 77.8 147 33.3
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 5.9e-13 77.4 88 45.5
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 7.7e-13 77.0 89 46.1
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 7.7e-13 77.0 89 46.1
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 7.7e-13 77.0 88 45.5
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.0e-12 76.6 88 45.5
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.3e-12 76.3 89 46.1
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.3e-12 76.3 89 42.7
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 1.7e-12 75.9 141 34.0
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.3e-12 75.5 89 44.9
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.3e-12 75.5 88 47.7
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.8e-12 74.7 47 68.1
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 3.8e-12 74.7 88 43.2
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.8e-12 74.7 150 31.3
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 6.6e-12 73.9 132 35.6
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 6.6e-12 73.9 132 35.6
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 6.6e-12 73.9 49 65.3
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 6.6e-12 73.9 155 32.9
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 6.6e-12 73.9 150 34.0
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 8.6e-12 73.6 88 44.3
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 8.6e-12 73.6 47 68.1
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 8.6e-12 73.6 88 44.3
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 8.6e-12 73.6 47 66.0
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.1e-11 73.2 131 35.1
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.1e-11 73.2 47 66.0
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 1.1e-11 73.2 47 66.0
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.1e-11 73.2 47 66.0
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.5e-11 72.8 135 34.8
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.5e-11 72.8 47 66.0
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.9e-11 72.4 47 68.1
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.9e-11 72.4 47 66.0
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.9e-11 72.4 47 66.0
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.9e-11 72.4 164 29.9
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 1.9e-11 72.4 47 66.0
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 1.9e-11 72.4 49 65.3
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.5e-11 72.0 47 68.1
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 3.3e-11 71.6 138 34.1
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 3.3e-11 71.6 47 63.8
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 5.5e-11 70.9 140 33.6
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 5.5e-11 70.9 88 42.0
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 5.5e-11 70.9 153 31.4
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 7.2e-11 70.5 47 63.8
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 7.2e-11 70.5 47 61.7
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 7.2e-11 70.5 47 61.7
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 7.2e-11 70.5 47 61.7
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 7.2e-11 70.5 152 31.6
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 9.5e-11 70.1 165 30.3
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 9.5e-11 70.1 165 30.3
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 9.5e-11 70.1 164 29.3
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 9.5e-11 70.1 88 43.2
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 9.5e-11 70.1 47 63.8
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 9.5e-11 70.1 47 63.8
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 1.2e-10 69.7 47 63.8
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 1.2e-10 69.7 47 63.8
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.6e-10 69.3 47 63.8
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 2.1e-10 68.9 48 64.6
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 2.1e-10 68.9 88 40.9
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.1e-10 68.9 163 29.4
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.1e-10 68.9 47 63.8
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 2.8e-10 68.6 162 30.9
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.8e-10 68.6 158 28.5
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 2.8e-10 68.6 47 63.8
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 3.6e-10 68.2 47 61.7
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 3.6e-10 68.2 47 66.0
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 3.6e-10 68.2 47 61.7
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 4.7e-10 67.8 171 28.7
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.1e-10 67.4 47 63.8
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.1e-10 67.4 47 63.8
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 6.1e-10 67.4 47 61.7
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.0e-09 66.6 47 59.6
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.0e-09 66.6 49 57.1
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.4e-09 66.2 48 64.6
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.8e-09 65.9 47 57.4
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 3.0e-09 65.1 47 59.6
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 6.8e-09 63.9 47 59.6
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 6.8e-09 63.9 47 57.4
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 8.9e-09 63.5 39 64.1
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.2e-08 63.2 90 40.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 2.0e-08 62.4 47 55.3
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.6e-08 62.0 116 31.0
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 4.9e-07 57.8 126 27.8
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 6.3e-07 57.4 47 53.2
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 6.3e-07 57.4 121 28.1
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 1.4e-06 56.2 47 51.1


User provided reference genes

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