Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 0.0e+00 1238.8 686 100.0
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 4.6e-310 1067.4 686 86.3
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 8.5e-296 1020.0 670 82.5
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.2e-295 1018.1 666 82.3
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 5.5e-295 1017.3 666 82.6
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.6e-294 1014.6 687 80.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 6.7e-293 1010.4 687 80.8
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 8.8e-293 1010.0 688 81.4
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.1e-292 1009.6 686 80.9
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.6e-292 1008.4 687 80.2
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.4e-292 1007.7 686 81.5
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 2.8e-291 1005.0 686 81.5
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.3e-291 1003.8 686 81.2
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.4e-290 1001.9 686 81.2
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 5.3e-290 1000.7 687 80.3
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.6e-289 998.4 684 80.7
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.2e-288 995.3 685 79.6
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 8.5e-288 993.4 686 79.9
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.4e-285 986.1 686 80.5
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 3.0e-285 984.9 686 79.4
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.0e-285 984.9 667 82.5
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 5.7e-284 980.7 686 80.6
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.8e-283 978.4 688 78.5
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 8.2e-283 976.9 690 77.7
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.4e-282 976.1 689 79.5
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 2.4e-282 975.3 689 79.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 3.1e-282 974.9 686 78.0
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 4.1e-282 974.5 686 77.7
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.2e-281 973.0 657 80.8
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.0e-281 972.2 687 78.0
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 3.5e-281 971.5 683 78.6
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.0e-280 969.9 687 78.2
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.0e-280 969.9 683 80.7
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 8.5e-280 966.8 687 77.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 4.2e-279 964.5 691 78.7
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.2e-278 963.0 689 76.8
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.2e-278 963.0 686 78.4
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.3e-277 958.7 691 76.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 4.0e-277 958.0 692 75.6
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 4.0e-277 958.0 748 72.2
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 5.2e-277 957.6 748 72.2
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 8.8e-277 956.8 696 76.3
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.2e-276 956.4 693 75.6
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.0e-276 955.7 665 77.6
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 4.4e-276 954.5 688 77.3
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.3e-275 953.0 682 77.3
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 4.8e-275 951.0 682 77.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 8.3e-275 950.3 688 75.6
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.4e-274 948.7 692 77.5
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 5.4e-274 947.6 698 77.4
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 7.0e-274 947.2 665 79.8
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 7.0e-274 947.2 689 77.2
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 2.7e-273 945.3 655 79.2
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 4.5e-273 944.5 681 77.2
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 2.9e-272 941.8 682 76.1
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.8e-272 941.4 682 76.1
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 8.5e-272 940.3 688 78.1
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.1e-271 939.9 665 78.8
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-271 939.5 727 74.0
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 4.2e-271 937.9 727 74.0
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 4.2e-271 937.9 684 76.9
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.5e-271 937.6 682 75.8
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.0e-269 933.3 693 75.6
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.3e-269 932.2 690 77.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 3.0e-269 931.8 693 75.5
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.0e-269 931.8 693 74.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.0e-269 931.8 682 77.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 3.0e-269 931.8 694 76.9
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 3.7e-267 924.9 694 74.5
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 8.3e-267 923.7 693 73.7
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.4e-266 922.2 684 76.0
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 4.1e-266 921.4 695 74.0
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 5.0e-264 914.4 692 74.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 5.0e-264 914.4 654 78.0
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 8.6e-264 913.7 690 73.9
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.5e-263 912.1 686 75.9
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-262 909.8 731 70.9
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.8e-262 908.7 694 73.6
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.8e-262 908.7 694 73.6
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 8.0e-262 907.1 637 80.8
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.3e-261 905.6 690 73.6
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.3e-259 899.8 657 76.1
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.4e-258 895.6 691 72.6
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 4.1e-258 894.8 651 76.7
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 5.4e-258 894.4 669 75.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.0e-258 894.0 696 73.7
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.2e-257 893.3 693 72.7
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.6e-257 892.9 691 73.1
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.0e-256 890.2 685 72.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.3e-256 889.0 692 73.3
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.3e-256 889.0 692 73.3
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 5.0e-256 887.9 687 75.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.5e-255 886.3 687 73.4
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 7.3e-255 884.0 681 71.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.6e-254 881.7 679 72.9
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 3.1e-253 878.6 724 69.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-252 876.7 686 74.3
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 5.8e-252 874.4 687 72.3
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 5.4e-250 867.8 573 82.5
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 9.2e-250 867.1 687 71.9
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.7e-249 865.5 616 79.4
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 3.5e-249 865.1 687 73.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.8e-249 864.0 735 67.8
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.3e-248 862.4 694 73.1
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 8.6e-248 860.5 687 71.5
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 8.6e-248 860.5 666 73.4
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 8.1e-246 854.0 683 71.4
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 4.0e-245 851.7 1036 52.2
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.5e-241 838.6 721 67.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 6.6e-240 834.3 653 73.0
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.8e-235 818.5 721 65.5
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.1e-233 812.8 742 64.7
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.3e-216 756.1 665 65.1
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.4e-210 736.9 664 63.3
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 9.3e-210 734.2 672 63.5
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 2.3e-208 729.6 703 62.9
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.9e-207 726.5 551 75.7
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.5e-207 726.1 649 65.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 5.3e-165 585.5 686 53.6
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 6.8e-160 568.5 424 77.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.6e-159 566.6 401 81.0
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.3e-147 526.9 370 77.3
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.6e-137 493.0 342 75.1
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.0e-131 473.4 570 53.5
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 7.8e-108 395.6 359 66.6
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.9e-94 350.5 506 48.6
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.5e-90 337.4 515 47.4
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 6.5e-78 296.2 707 33.7
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.6e-76 291.6 273 64.1
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 2.5e-53 214.5 774 30.9
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.6e-52 211.8 560 32.7
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.7e-47 194.5 185 61.1
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.2e-45 187.6 156 62.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 9.4e-45 186.0 129 73.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 2.2e-41 174.9 126 73.0
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.4e-35 155.6 94 81.9
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.4e-27 129.0 642 24.6
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.0e-26 125.2 90 80.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.5e-26 123.2 691 23.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.9e-16 92.0 71 67.6
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.5e-13 82.4 109 56.0
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 6.2e-12 77.0 690 21.9
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.3e-11 75.1 66 65.2
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.4e-08 65.1 82 51.2
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 9.2e-08 63.2 54 64.8
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 4.6e-07 60.8 82 51.2
Nn3g17783 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.0e-06 59.7 61 59.0
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 8.6e-06 56.6 28 92.9


User provided reference genes

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