Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23712 Nelumbo nucifera HOM05D003188 ORTHO05D003602 5.7e-25 116.7 56 100.0
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 1.8e-18 95.1 50 90.0
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 1.2e-17 92.4 50 88.0
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 1.2e-17 92.4 50 88.0
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 1.2e-17 92.4 50 88.0
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 1.2e-17 92.4 50 88.0
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 1.2e-17 92.4 50 86.0
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 3.4e-17 90.9 50 84.0
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 5.8e-17 90.1 49 85.7
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 5.8e-17 90.1 50 84.0
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 5.8e-17 90.1 50 84.0
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 7.5e-17 89.7 50 82.0
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 7.5e-17 89.7 50 82.0
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 7.5e-17 89.7 50 82.0
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 9.8e-17 89.4 50 84.0
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 9.8e-17 89.4 50 84.0
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 9.8e-17 89.4 50 82.0
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 9.8e-17 89.4 50 86.0
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 9.8e-17 89.4 50 86.0
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 9.8e-17 89.4 50 82.0
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 9.8e-17 89.4 49 83.7
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.3e-16 89.0 50 80.0
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.3e-16 89.0 50 80.0
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 1.3e-16 89.0 50 80.0
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 1.3e-16 89.0 50 80.0
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.7e-16 88.6 50 82.0
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 1.7e-16 88.6 49 83.7
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 2.2e-16 88.2 50 80.0
Rhsim09G0110300 Rhododendron simsii HOM05D003188 ORTHO05D003602 2.2e-16 88.2 50 82.0
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 2.9e-16 87.8 49 81.6
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 2.9e-16 87.8 49 81.6
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.7e-16 87.4 50 78.0
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 4.9e-16 87.0 49 81.6
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 4.9e-16 87.0 50 78.0
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 4.9e-16 87.0 50 80.0
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 4.9e-16 87.0 49 79.6
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 6.4e-16 86.7 50 84.0
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 6.4e-16 86.7 50 84.0
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 6.4e-16 86.7 50 80.0
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 8.3e-16 86.3 50 82.0
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 8.3e-16 86.3 49 79.6
GSVIVG01012261001 Vitis vinifera HOM05D003188 ORTHO05D003602 8.3e-16 86.3 49 81.6
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 1.1e-15 85.9 49 79.6
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 1.1e-15 85.9 50 78.0
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 1.1e-15 85.9 50 80.0
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 1.1e-15 85.9 49 77.6
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 1.4e-15 85.5 50 82.0
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.9e-15 85.1 50 76.0
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.9e-15 85.1 50 76.0
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 1.9e-15 85.1 48 79.2
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 1.9e-15 85.1 48 79.2
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 1.9e-15 85.1 50 78.0
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.9e-15 85.1 50 82.0
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 2.4e-15 84.7 50 78.0
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 3.2e-15 84.3 50 78.0
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 4.1e-15 84.0 48 77.1
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 4.1e-15 84.0 48 77.1
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 4.1e-15 84.0 48 77.1
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 4.1e-15 84.0 48 77.1
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 5.4e-15 83.6 48 81.2
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 5.4e-15 83.6 50 78.0
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 7.0e-15 83.2 48 79.2
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 7.0e-15 83.2 49 79.6
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 9.2e-15 82.8 50 74.0
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 9.2e-15 82.8 50 74.0
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.2e-14 82.4 49 77.6
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.6e-14 82.0 50 80.0
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 1.6e-14 82.0 52 76.9
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 2.0e-14 81.6 49 79.6
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 2.7e-14 81.3 50 76.0
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 2.7e-14 81.3 47 80.9
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.7e-14 81.3 50 72.0
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.7e-14 81.3 50 72.0
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 2.7e-14 81.3 50 72.0
SHI18942 Sapria himalayana HOM05D003188 ORTHO05D003602 2.7e-14 81.3 50 74.0
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 3.5e-14 80.9 50 76.0
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 3.5e-14 80.9 50 76.0
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 3.5e-14 80.9 48 75.0
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 4.6e-14 80.5 47 78.7
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 4.6e-14 80.5 48 77.1
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 4.6e-14 80.5 49 73.5
SalBow1G5101 Salvia bowleyana HOM05D003188 ORTHO05D003602 4.6e-14 80.5 49 75.5
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 6.0e-14 80.1 48 75.0
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 7.8e-14 79.7 48 70.8
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 1.0e-13 79.3 48 75.0
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 1.0e-13 79.3 48 75.0
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 1.0e-13 79.3 49 75.5
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 1.0e-13 79.3 44 86.4
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.0e-13 79.3 48 75.0
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 1.0e-13 79.3 48 75.0
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 1.3e-13 79.0 48 75.0
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 2.3e-13 78.2 49 73.5
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 2.3e-13 78.2 48 75.0
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 2.3e-13 78.2 48 75.0
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 8.6e-13 76.3 44 79.5
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 8.6e-13 76.3 48 68.8
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 1.1e-12 75.9 47 70.2
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 1.9e-12 75.1 51 68.6
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 1.9e-12 75.1 51 72.5
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 4.3e-12 73.9 43 79.1
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 7.3e-12 73.2 45 73.3
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 7.3e-12 73.2 45 73.3
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 7.3e-12 73.2 51 66.7
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 1.2e-11 72.4 44 81.8
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 1.2e-11 72.4 48 64.6
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 2.1e-11 71.6 48 68.8
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.1e-11 71.6 43 79.1
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 2.8e-11 71.2 42 83.3
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 3.6e-11 70.9 51 64.7
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 3.6e-11 70.9 51 64.7
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 6.2e-11 70.1 48 66.7
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 8.0e-11 69.7 52 67.3
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 8.0e-11 69.7 52 67.3
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 8.0e-11 69.7 51 70.6
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 8.0e-11 69.7 48 66.7
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 1.4e-10 68.9 51 66.7
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 1.8e-10 68.6 48 64.6
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.8e-10 68.6 48 66.7
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.3e-10 68.2 48 64.6
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.3e-10 68.2 48 64.6
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.3e-10 68.2 48 64.6
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 2.3e-10 68.2 48 64.6
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 3.1e-10 67.8 48 62.5
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 4.0e-10 67.4 51 66.7
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 5.2e-10 67.0 48 62.5
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 5.2e-10 67.0 48 62.5
arahy.Tifrunner.gnm1.ann1.LTYE9H Arachis hypogaea HOM05D003188 ORTHO05D003602 1.2e-09 65.9 43 69.8
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 1.5e-09 65.5 47 61.7
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 4.4e-09 63.9 48 62.5
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 9.8e-09 62.8 50 64.0
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 9.8e-09 62.8 52 67.3
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.8e-09 62.8 52 67.3
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.8e-09 62.8 52 67.3
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.8e-09 62.8 52 67.3
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.8e-09 62.8 52 67.3
arahy.Tifrunner.gnm1.ann1.Y7FW0X Arachis hypogaea HOM05D003188 ORTHO05D003602 1.3e-08 62.4 34 82.4
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 4.9e-08 60.5 46 67.4
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 8.3e-08 59.7 57 64.9
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.4e-07 58.9 48 56.2
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 1.4e-07 58.9 53 58.5
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 2.4e-07 58.2 44 65.9
arahy.Tifrunner.gnm1.ann1.NH5Z51 Arachis hypogaea HOM05D003188 ORTHO05D003602 7.0e-07 56.6 41 61.0
Cpa.g.sc79.50 Carica papaya HOM05D003188 ORTHO05D003602 7.0e-07 56.6 31 80.6
FAN04G0824 Fragaria x ananassa HOM05D003188 ORTHO05D003602 7.0e-07 56.6 43 67.4
Os11g0137400 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 9.2e-07 56.2 46 54.3
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 9.2e-07 56.2 52 51.9
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 6.0e-06 53.5 45 53.3
Eucgr.B01773 Eucalyptus grandis HOM05D003188 ORTHO05D003602 7.8e-06 53.1 33 72.7
Eucgr.E01579 Eucalyptus grandis HOM05D003188 ORTHO05D003602 7.8e-06 53.1 33 72.7


User provided reference genes

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