Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.2e-76 288.9 143 100.0
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.4e-67 259.6 143 88.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 4.2e-64 248.1 143 85.3
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 9.4e-64 246.9 143 83.2
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.6e-63 245.0 143 81.8
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.0e-62 241.9 143 83.9
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.9e-62 241.5 143 80.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.2e-62 241.1 134 83.6
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 5.2e-62 241.1 143 81.1
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 8.8e-62 240.4 143 80.4
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 1.1e-61 240.0 143 80.4
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.5e-61 239.6 143 80.4
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.6e-61 238.8 137 79.6
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 9.7e-61 236.9 143 79.7
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 2.2e-60 235.7 143 78.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 3.7e-60 235.0 143 77.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 3.7e-60 235.0 136 79.4
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 4.8e-60 234.6 143 79.0
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 78.9
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.4e-59 233.0 143 78.3
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.8e-59 232.6 143 74.8
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.1e-59 231.5 143 76.2
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 9.1e-59 230.3 136 77.2
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 9.1e-59 230.3 143 75.5
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-58 229.9 143 77.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.6e-58 229.6 136 77.2
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.6e-58 228.8 136 77.2
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.5e-58 228.4 136 76.5
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 4.5e-58 228.0 143 74.1
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 5.9e-58 227.6 136 77.9
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 7.7e-58 227.3 143 76.2
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.0e-57 226.9 134 78.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.0e-57 226.9 143 76.2
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.0e-57 226.9 143 76.2
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-57 226.5 143 78.3
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.2e-57 225.7 136 75.7
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.2e-57 225.7 143 76.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.2e-57 225.7 136 78.7
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.2e-57 225.7 143 74.8
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.9e-57 225.3 140 79.3
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 3.8e-57 224.9 143 76.2
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 5.0e-57 224.6 143 74.1
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 6.5e-57 224.2 143 72.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 8.5e-57 223.8 135 80.0
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-56 223.4 143 72.7
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.5e-56 223.0 141 73.8
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.9e-56 222.6 141 73.8
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.9e-56 222.6 143 75.5
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 143 76.2
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.9e-56 222.6 143 76.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.5e-56 222.2 143 75.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 3.2e-56 221.9 145 73.1
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.2e-56 221.9 136 76.5
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.2e-56 221.9 140 77.9
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 143 72.7
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.0e-55 217.2 143 73.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.0e-55 217.2 143 73.4
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 8.0e-55 217.2 143 72.7
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 8.0e-55 217.2 143 72.0
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-54 216.9 143 73.4
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.4e-54 216.5 136 71.3
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.8e-54 216.1 140 70.0
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-54 216.1 140 69.3
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 71.3
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 3.0e-54 215.3 143 72.0
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 4.0e-54 214.9 136 71.3
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.0e-54 214.9 143 72.0
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 5.2e-54 214.5 136 70.6
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 6.7e-54 214.2 140 67.9
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.2e-53 213.4 143 70.6
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.5e-53 213.0 136 70.6
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.5e-53 213.0 140 67.9
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.5e-53 213.0 136 70.6
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.5e-53 213.0 143 71.3
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.6e-53 212.2 171 62.6
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 3.3e-53 211.8 136 69.9
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 3.3e-53 211.8 136 69.9
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 3.3e-53 211.8 136 69.9
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 3.3e-53 211.8 136 69.9
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 3.3e-53 211.8 159 64.2
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.4e-53 211.5 140 68.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.4e-53 211.5 140 68.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 5.7e-53 211.1 136 69.9
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 5.7e-53 211.1 136 69.9
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 5.7e-53 211.1 136 69.9
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 5.7e-53 211.1 136 69.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 5.7e-53 211.1 141 70.2
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 7.5e-53 210.7 136 70.6
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 7.5e-53 210.7 136 70.6
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 7.5e-53 210.7 136 70.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 7.5e-53 210.7 143 71.3
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 9.7e-53 210.3 136 69.9
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 71.6
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.7e-52 209.5 134 74.6
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.7e-52 209.5 136 71.3
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.2e-52 209.1 141 69.5
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.8e-52 208.8 136 69.1
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.8e-52 208.8 134 70.9
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 3.7e-52 208.4 136 69.9
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 3.7e-52 208.4 136 69.9
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 3.7e-52 208.4 194 58.2
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 3.7e-52 208.4 194 58.2
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 3.7e-52 208.4 138 68.8
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 4.8e-52 208.0 143 71.3
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 4.8e-52 208.0 143 71.3
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.8e-52 208.0 143 69.2
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.1e-51 206.8 143 69.9
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 135 71.1
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.1e-51 205.3 134 69.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 4.1e-51 204.9 141 68.8
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 5.3e-51 204.5 136 66.9
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 5.3e-51 204.5 136 73.5
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.2e-50 203.4 134 69.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.2e-50 203.4 141 69.5
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.5e-50 201.8 143 67.1
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 3.5e-50 201.8 140 69.3
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 4.5e-50 201.4 134 70.9
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.3e-49 199.9 136 71.3
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 1.3e-49 199.9 135 71.9
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.2e-49 199.1 143 63.6
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.9e-49 198.7 143 65.7
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.9e-49 198.7 134 67.2
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 8.5e-49 197.2 141 67.4
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.1e-48 196.8 143 69.2
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.1e-48 196.8 143 65.7
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.5e-48 196.4 130 68.5
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.9e-48 196.1 143 68.5
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.5e-48 195.7 139 67.6
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 3.2e-48 195.3 137 68.6
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 5.5e-48 194.5 189 51.3
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 7.2e-48 194.1 143 62.2
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 6.1e-47 191.0 143 64.3
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.0e-46 190.3 118 78.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.4e-46 189.9 143 63.6
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 5.2e-46 188.0 137 65.7
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 8.8e-46 187.2 143 67.8
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.8e-46 187.2 143 63.6
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 8.8e-46 187.2 145 61.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.2e-44 182.6 176 55.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.2e-44 182.6 143 62.2
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.0e-43 177.6 140 62.9
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.2e-42 176.8 136 62.5
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.0e-41 173.7 126 65.9
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.5e-40 169.1 109 77.1
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.3e-40 168.7 140 58.6
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.2e-40 168.3 140 58.6
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.0e-38 162.2 136 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 5.7e-37 157.9 137 51.8
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.5e-37 157.5 136 58.1
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.3e-36 156.8 136 52.9
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.3e-36 156.8 136 52.9
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 2.8e-36 155.6 289 36.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 5.0e-33 144.8 136 50.0
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.6e-31 139.8 125 51.2
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.7e-28 129.8 126 50.8
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 8.3e-28 127.5 73 78.1
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.0e-25 118.2 108 56.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.0e-25 118.2 108 56.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.0e-25 118.2 108 56.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 9.5e-24 114.0 67 74.6
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 3.4e-21 105.5 67 68.7
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.7e-20 102.1 81 61.7
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 3.7e-20 102.1 87 57.5
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.9e-19 99.8 81 61.7
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 2.1e-18 96.3 121 44.6
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 6.0e-18 94.7 59 72.9
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 6.0e-18 94.7 59 72.9
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 2.3e-17 92.8 117 41.0
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 8.6e-17 90.9 103 48.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.6e-15 86.7 78 55.1
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.8e-14 83.2 106 46.2
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 7.5e-13 77.8 78 48.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.4e-11 73.6 109 43.1
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 5.4e-11 71.6 40 70.0
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 1.6e-10 70.1 69 53.6
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 3.5e-10 68.9 122 39.3
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 4.6e-10 68.6 69 53.6
Zm00001eb413440 Zea mays HOM05D000646 ORTHO05D000607 4.3e-08 62.0 32 84.4
Zm00001eb371620 Zea mays HOM05D000283 ORTHO05D000358 7.3e-08 61.2 32 84.4
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.6e-07 58.9 40 70.0
Zm00001eb370250 Zea mays HOM05D000283 ORTHO05D000358 3.6e-07 58.9 34 76.5
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 4.7e-07 58.5 34 70.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.1e-06 57.4 34 67.6
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-06 57.4 42 69.0
TAR381G1165 Trochodendron aralioides HOM05D000503 ORTHO05D000361 1.4e-06 57.0 95 42.1
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 3.1e-06 55.8 32 71.9
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 5.2e-06 55.1 42 69.0


User provided reference genes

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