Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.0e-81 305.1 146 100.0
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 9.6e-64 246.9 144 77.1
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.8e-63 245.4 136 80.9
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.1e-63 243.8 136 80.1
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-62 243.4 141 75.9
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.8e-62 242.7 138 77.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.6e-61 238.8 137 78.1
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 5.8e-61 237.7 143 74.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 7.6e-61 237.3 135 78.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 6.4e-60 234.2 140 77.9
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 6.4e-60 234.2 142 73.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 8.4e-60 233.8 134 77.6
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.1e-59 233.4 133 80.5
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.4e-59 233.0 152 71.7
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 4.2e-59 231.5 143 71.3
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.4e-59 231.1 139 72.7
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 7.1e-59 230.7 152 71.1
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-58 229.9 142 75.4
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-58 229.6 139 71.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-58 229.6 139 71.9
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.1e-58 229.2 145 73.1
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.5e-58 228.4 145 73.1
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.6e-58 228.0 137 77.4
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 6.0e-58 227.6 141 75.2
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.9e-58 227.3 140 73.6
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 7.9e-58 227.3 134 74.6
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-57 226.5 139 71.2
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.3e-57 226.5 138 73.2
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 5.1e-57 224.6 138 71.7
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 5.1e-57 224.6 138 71.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.7e-57 224.2 135 74.1
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 8.7e-57 223.8 136 73.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.9e-56 222.6 149 70.5
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.9e-56 222.6 136 72.8
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 2.5e-56 222.2 139 72.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 2.5e-56 222.2 141 73.8
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 3.3e-56 221.9 135 72.6
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 4.3e-56 221.5 135 73.3
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 7.4e-56 220.7 138 73.2
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.6e-55 219.5 141 71.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.1e-55 219.2 135 74.8
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.1e-55 219.2 135 74.8
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 2.1e-55 219.2 138 72.5
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.8e-55 218.8 141 70.2
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.7e-55 218.4 143 72.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 3.7e-55 218.4 141 71.6
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 6.2e-55 217.6 134 73.1
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 6.2e-55 217.6 136 68.4
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 8.1e-55 217.2 135 74.1
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.4e-54 216.5 135 71.1
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.8e-54 216.1 135 74.1
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 4.0e-54 214.9 136 72.8
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 5.3e-54 214.5 134 70.9
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 6.9e-54 214.2 135 73.3
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.9e-54 214.2 140 65.0
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.9e-54 214.2 140 65.0
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.0e-54 213.8 139 66.2
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 9.0e-54 213.8 138 68.8
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-53 213.4 135 70.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-53 213.4 135 70.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-53 213.4 135 70.4
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.0e-53 212.6 178 59.0
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.0e-53 212.6 136 70.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.0e-53 212.6 137 70.1
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.0e-53 212.6 135 66.7
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.0e-53 212.6 142 66.9
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.4e-53 211.8 139 70.5
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 3.4e-53 211.8 136 70.6
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.8e-53 211.1 138 67.4
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 7.6e-53 210.7 135 68.9
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.9e-53 210.3 140 68.6
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.3e-52 209.9 140 63.6
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.3e-52 209.9 140 62.9
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.3e-52 209.9 134 70.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-52 209.9 134 70.9
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.3e-52 209.9 140 67.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-52 209.9 143 70.6
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-52 209.9 134 70.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-52 209.9 134 70.1
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.9e-52 208.8 141 68.8
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.9e-52 208.8 143 66.4
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-52 208.8 141 67.4
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.8e-52 208.4 128 71.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 4.9e-52 208.0 140 65.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 6.4e-52 207.6 140 61.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 8.4e-52 207.2 143 63.6
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.4e-52 207.2 143 63.6
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.4e-51 206.5 135 66.7
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-51 206.5 143 64.3
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 2.4e-51 205.7 135 68.1
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.4e-51 205.7 136 65.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 4.2e-51 204.9 133 66.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.2e-51 204.9 133 66.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.1e-51 204.1 143 64.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.1e-51 204.1 143 64.3
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 9.3e-51 203.8 139 69.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.2e-50 203.4 134 70.9
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.2e-50 203.4 137 66.4
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-50 202.6 139 66.2
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.1e-50 202.6 140 65.0
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-50 202.2 140 64.3
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-50 202.2 134 70.1
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.5e-50 201.8 142 66.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 3.5e-50 201.8 145 68.3
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-50 201.4 140 64.3
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 6.0e-50 201.1 143 63.6
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 7.9e-50 200.7 140 64.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.0e-49 200.3 140 61.4
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.3e-49 199.9 142 66.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-49 199.5 136 65.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.8e-49 199.5 140 63.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.3e-49 199.1 140 64.3
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.1e-48 196.8 129 67.4
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.1e-48 196.8 140 63.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.5e-48 195.7 133 61.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 3.3e-48 195.3 139 64.7
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.6e-48 194.5 140 61.4
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 5.6e-48 194.5 135 60.0
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 3.7e-47 191.8 141 65.2
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 6.2e-47 191.0 136 61.0
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 6.2e-47 191.0 136 61.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.4e-46 189.9 139 61.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.8e-46 189.5 141 63.1
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 2.4e-46 189.1 139 63.3
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.4e-46 189.1 139 61.9
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 6.9e-46 187.6 133 59.4
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 4.5e-45 184.9 136 60.3
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.8e-45 184.5 136 60.3
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.0e-44 183.7 136 59.6
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 4.9e-44 181.4 141 61.0
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 8.4e-44 180.6 146 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 4.2e-43 178.3 148 54.7
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 9.3e-43 177.2 140 57.1
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.1e-42 176.0 145 57.9
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.7e-42 175.6 141 59.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-41 173.3 200 45.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.1e-40 170.2 115 72.2
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.1e-40 170.2 139 50.4
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.1e-40 170.2 139 56.8
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 5.7e-40 167.9 137 58.4
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 5.7e-40 167.9 97 73.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 9.7e-40 167.2 140 58.6
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.2e-39 166.0 137 56.9
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.0e-37 159.5 136 55.1
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 4.5e-37 158.3 136 50.7
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 5.9e-37 157.9 113 66.4
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.1e-35 153.7 149 47.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-33 147.1 140 50.0
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.4e-33 146.7 96 63.5
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 5.1e-33 144.8 140 49.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.9e-32 142.9 138 50.0
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 3.3e-32 142.1 142 47.2
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.7e-26 122.5 131 49.6
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.4e-24 115.2 132 46.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.7e-24 114.0 71 63.4
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.2e-23 112.8 109 53.2
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 4.8e-23 111.7 75 69.3
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.1e-22 109.0 116 45.7
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 5.0e-20 101.7 137 40.1
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 2.7e-18 95.9 66 71.2
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 6.1e-18 94.7 63 73.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.0e-18 94.4 85 57.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 5.2e-17 91.7 103 47.6
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-16 90.5 62 67.7
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.5e-16 90.1 50 68.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-15 86.7 52 61.5
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.6e-13 79.3 40 70.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 3.5e-13 79.0 70 58.6
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 5.2e-09 65.1 74 48.6
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 2.8e-07 59.3 38 71.1


User provided reference genes

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