Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.1e-167 592.4 330 100.0
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.2e-127 460.3 303 78.5
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 3.4e-125 452.2 301 83.1
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 7.6e-125 451.1 304 78.6
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 9.9e-125 450.7 302 74.2
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.9e-124 448.4 305 76.4
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 3.2e-123 445.7 305 76.7
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.2e-123 445.7 314 75.2
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.6e-122 443.4 304 77.3
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.1e-122 443.0 302 73.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.5e-122 442.2 305 80.7
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 7.8e-122 441.0 300 73.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.3e-121 440.3 303 74.6
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.9e-121 438.7 302 73.5
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.5e-120 436.8 301 71.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.3e-120 435.3 304 71.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 7.3e-120 434.5 305 75.1
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.2e-119 431.4 305 74.4
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.1e-119 431.0 305 74.8
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.1e-118 430.6 303 79.2
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.4e-118 430.3 300 70.0
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.4e-118 429.5 301 81.1
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.1e-118 429.1 303 70.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.3e-118 428.3 300 80.3
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 6.9e-118 427.9 309 71.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.0e-118 427.6 303 69.0
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-117 427.2 300 80.7
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.0e-117 426.4 304 69.1
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.0e-117 426.4 306 70.9
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.6e-117 426.0 300 81.0
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 3.4e-117 425.6 307 73.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 7.6e-117 424.5 305 69.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.3e-116 423.7 308 72.4
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.7e-116 423.3 305 73.4
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.9e-116 422.5 303 78.5
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.9e-116 422.5 300 72.0
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.8e-116 422.2 319 67.4
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 3.8e-116 422.2 301 77.7
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 4.9e-116 421.8 327 67.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.9e-116 421.8 307 75.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 8.4e-116 421.0 303 77.9
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 4.2e-115 418.7 305 69.5
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 4.2e-115 418.7 300 69.0
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 4.2e-115 418.7 301 68.1
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 4.2e-115 418.7 306 75.2
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 5.4e-115 418.3 305 70.2
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 7.1e-115 417.9 305 75.1
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 9.3e-115 417.5 300 70.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 9.3e-115 417.5 306 72.5
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.6e-114 416.8 307 77.5
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.6e-114 415.2 304 70.7
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.6e-114 415.2 304 70.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 4.6e-114 415.2 304 73.7
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.6e-114 415.2 304 79.3
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.0e-114 414.8 236 83.5
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 6.0e-114 414.8 302 71.5
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 6.0e-114 414.8 304 72.0
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.0e-113 414.1 304 67.1
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.3e-113 413.7 307 75.9
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.7e-113 413.3 307 71.7
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.7e-113 413.3 303 68.6
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.3e-113 412.9 305 73.4
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 3.0e-113 412.5 306 69.3
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 6.6e-113 411.4 306 77.5
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 8.7e-113 411.0 306 67.3
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 2.5e-112 409.5 303 73.3
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.3e-112 408.7 305 76.7
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.6e-112 408.3 305 71.1
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.3e-112 407.9 301 68.4
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.3e-111 407.1 306 70.3
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.3e-111 407.1 308 68.8
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.6e-111 406.8 305 68.9
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 2.1e-111 406.4 300 69.0
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.1e-111 406.4 302 76.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.6e-111 405.6 303 65.3
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 4.8e-111 405.2 304 70.7
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 8.1e-111 404.4 302 74.2
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.4e-110 403.7 301 74.8
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.8e-110 403.3 300 72.0
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.1e-110 402.5 304 73.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.1e-110 402.5 308 72.1
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.0e-110 402.1 303 66.0
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.0e-110 402.1 301 74.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.2e-109 400.6 308 71.8
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 2.0e-109 399.8 306 74.2
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.5e-109 398.7 307 69.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.9e-109 397.5 307 73.0
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 9.9e-109 397.5 305 68.2
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.1e-107 394.0 308 74.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.9e-107 393.3 300 69.0
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 7.9e-106 387.9 301 64.1
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.1e-105 385.2 301 66.8
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 6.7e-105 384.8 302 67.2
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.4e-104 381.3 301 63.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-103 380.6 306 66.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 8.1e-103 377.9 304 68.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 9.0e-102 374.4 314 65.3
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 9.0e-102 374.4 305 71.5
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 9.0e-102 374.4 305 67.5
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 9.0e-102 374.4 403 51.9
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 7.6e-101 371.3 290 64.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 8.4e-100 367.9 302 63.2
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.4e-99 367.1 304 59.2
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.5e-99 366.3 301 70.1
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-98 364.0 303 59.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.6e-98 363.6 304 58.6
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.0e-98 361.7 304 62.8
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 7.9e-98 361.3 308 64.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.0e-97 360.9 308 62.7
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.0e-97 359.4 300 58.7
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 3.9e-97 359.0 308 61.7
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 3.9e-97 359.0 304 59.5
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-96 357.5 305 63.3
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 4.3e-96 355.5 301 58.8
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 7.4e-96 354.8 308 66.2
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.6e-95 353.6 305 62.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.8e-95 352.8 301 59.5
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 4.8e-95 352.1 304 63.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.2e-95 351.7 300 60.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.1e-94 350.9 309 63.4
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 3.1e-94 349.4 305 61.0
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.9e-94 348.2 309 62.8
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.5e-93 347.1 306 63.1
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.5e-93 345.5 308 61.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 5.8e-93 345.1 302 58.6
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 9.3e-91 337.8 301 55.1
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.9e-90 334.7 301 64.5
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 6.7e-89 331.6 302 64.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.7e-89 331.6 386 56.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.9e-88 330.1 261 67.0
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.3e-88 329.3 253 70.4
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.4e-86 323.2 257 70.8
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.2e-85 320.9 301 52.2
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.1e-82 308.5 224 70.5
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.9e-81 305.8 184 81.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.5e-80 303.9 223 70.4
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 8.2e-79 298.1 187 77.5
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.3e-76 290.8 236 58.9
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.2e-75 286.2 317 54.3
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 7.2e-75 285.0 242 71.1
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 2.7e-74 283.1 260 58.1
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.7e-74 282.3 236 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 3.7e-71 272.7 307 44.6
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.8e-70 270.4 253 54.9
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.5e-69 266.2 204 69.1
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 2.7e-66 256.5 239 55.2
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.7e-66 255.8 307 41.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 8.0e-66 255.0 205 72.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.5e-64 250.8 228 52.6
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 3.3e-64 249.6 205 65.9
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 5.7e-64 248.8 304 47.0
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.8e-63 246.5 142 81.0
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.4e-62 244.2 246 52.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.2e-60 236.9 204 59.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.5e-59 234.2 246 51.2
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.9e-59 233.8 313 38.7
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.4e-59 231.5 301 46.8
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.5e-56 221.9 128 82.0
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.3e-52 211.1 300 44.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 5.5e-51 205.7 201 53.2
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.4e-49 201.1 201 59.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.0e-49 199.5 140 70.0
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 9.1e-46 188.3 206 48.5
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 6.1e-42 175.6 100 83.0
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-40 169.9 115 73.9
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.3e-39 165.2 112 71.4
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.6e-37 161.0 134 61.2
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.6e-21 106.3 60 75.0
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 6.0e-21 105.9 149 34.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-16 90.5 54 77.8
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 4.9e-15 86.3 232 25.0
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 6.0e-13 79.3 140 37.1
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-10 71.6 76 51.3
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.4e-09 67.4 37 83.8
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.5e-08 64.7 103 38.8
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 4.4e-08 63.2 45 68.9
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.9e-06 57.8 75 66.7


User provided reference genes

Program Settings