Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.7e-55 218.4 109 100.0
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 2.1e-47 192.2 100 93.0
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.1e-47 192.2 100 95.0
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.6e-47 191.4 100 93.0
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 3.6e-47 191.4 100 93.0
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 3.6e-47 191.4 100 93.0
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.4e-46 189.5 100 92.0
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 3.9e-46 188.0 100 90.0
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 3.9e-46 188.0 100 92.0
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 8.8e-46 186.8 100 90.0
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 8.8e-46 186.8 100 91.0
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.1e-45 186.4 100 92.0
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.5e-45 186.0 100 90.0
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.5e-45 186.0 100 90.0
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.5e-45 186.0 100 90.0
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.5e-45 186.0 100 90.0
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.5e-45 186.0 100 91.0
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.5e-45 186.0 100 90.0
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.0e-45 185.7 100 89.0
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.0e-45 185.7 100 89.0
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.0e-45 185.7 100 89.0
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 2.6e-45 185.3 100 90.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 2.6e-45 185.3 100 89.0
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 2.6e-45 185.3 100 90.0
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.3e-45 184.9 100 90.0
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 3.3e-45 184.9 100 91.0
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 3.3e-45 184.9 100 88.0
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 3.3e-45 184.9 100 88.0
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 3.3e-45 184.9 100 89.0
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 3.3e-45 184.9 100 89.0
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 4.4e-45 184.5 100 91.0
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 4.4e-45 184.5 100 89.0
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 4.4e-45 184.5 100 91.0
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 4.4e-45 184.5 99 89.9
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 5.7e-45 184.1 100 88.0
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 5.7e-45 184.1 100 89.0
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 5.7e-45 184.1 99 90.9
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 5.7e-45 184.1 100 89.0
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 5.7e-45 184.1 100 88.0
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 5.7e-45 184.1 100 90.0
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 5.7e-45 184.1 100 91.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 7.4e-45 183.7 100 88.0
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 7.4e-45 183.7 100 89.0
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 7.4e-45 183.7 100 90.0
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 88.0
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 89.0
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 89.0
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 88.0
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 89.0
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 89.0
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 89.0
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 9.7e-45 183.3 100 89.0
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.3e-44 183.0 100 89.0
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.3e-44 183.0 100 91.0
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 89.0
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 88.0
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 88.0
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 88.0
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 88.0
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 89.0
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 89.0
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 88.0
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 89.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 89.0
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 89.0
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 1.7e-44 182.6 100 88.0
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.2e-44 182.2 100 88.0
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.2e-44 182.2 100 88.0
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.2e-44 182.2 100 88.0
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 3.7e-44 181.4 100 89.0
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 3.7e-44 181.4 100 88.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.8e-44 181.0 100 88.0
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 6.3e-44 180.6 113 80.5
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 87.0
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 88.0
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 88.0
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 86.0
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 87.0
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 88.0
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 6.3e-44 180.6 100 88.0
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 8.2e-44 180.3 100 87.0
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 8.2e-44 180.3 100 88.0
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 8.2e-44 180.3 100 87.0
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.1e-43 179.9 100 88.0
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.4e-43 179.5 100 87.0
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.4e-43 179.5 100 87.0
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.4e-43 179.5 100 88.0
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 1.8e-43 179.1 100 87.0
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 9.1e-43 176.8 100 85.0
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.2e-42 176.4 100 86.0
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 5.0e-41 171.0 100 81.0
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.1e-40 169.9 100 80.0
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 1.1e-40 169.9 100 82.0
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 2.5e-40 168.7 118 73.7
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.5e-40 168.7 99 80.8
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.5e-40 168.7 100 79.0
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 2.5e-40 168.7 100 79.0
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 3.2e-40 168.3 100 80.0
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 9.4e-40 166.8 100 79.0
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 9.7e-37 156.8 100 77.0
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.1e-32 143.3 74 89.2
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 3.2e-32 141.7 105 67.6
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 3.2e-32 141.7 82 85.4
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.8e-28 128.6 100 68.0
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 6.3e-28 127.5 100 68.0
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.1e-27 126.7 100 68.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.1e-27 126.7 83 75.9
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.4e-27 126.3 100 67.0
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-27 126.3 100 67.0
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-27 126.3 100 67.0
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 1.4e-27 126.3 100 67.0
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-27 125.9 100 68.0
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-27 125.9 100 68.0
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.4e-27 125.6 83 75.9
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.1e-27 124.8 83 73.5
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 5.4e-27 124.4 100 66.0
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.6e-26 122.9 72 84.7
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.0e-26 122.5 64 89.1
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 2.7e-26 122.1 108 54.6
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.5e-26 121.7 83 74.7
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 7.7e-26 120.6 100 64.0
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 1.5e-24 116.3 108 54.6
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.1e-23 112.5 74 77.0
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.2e-18 96.7 49 91.8
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.6e-18 96.3 104 52.9
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 3.5e-18 95.1 62 77.4
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.0e-13 79.3 99 41.4
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 2.6e-13 79.0 79 50.6
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 7.5e-13 77.4 51 72.5
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 4.9e-12 74.7 99 38.4
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.1e-11 73.6 33 97.0
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 1.9e-11 72.8 49 71.4


User provided reference genes

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