Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23585 Nelumbo nucifera HOM05D008138 ORTHO05D010043 8.3e-82 307.0 156 100.0
Nn3g17583 Nelumbo nucifera HOM05D008138 ORTHO05D010043 1.6e-48 196.4 128 75.8
TAR629G0644 Trochodendron aralioides HOM05D008138 ORTHO05D010043 4.3e-30 135.2 125 57.6
Dinv33884 Davidia involucrata HOM05D008138 ORTHO05D010043 1.8e-23 113.2 94 58.5
CSS0029791 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 9.7e-22 107.5 128 43.8
CSS0022846 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 3.7e-21 105.5 114 45.6
Dinv01548 Davidia involucrata HOM05D008138 ORTHO05D010043 8.2e-21 104.4 87 57.5
Eucgr.G01572 Eucalyptus grandis HOM05D008138 ORTHO05D010043 2.0e-19 99.8 94 52.1
Eucgr.G02403 Eucalyptus grandis HOM05D008138 ORTHO05D010043 3.5e-19 99.0 94 52.1
Nn3g17585 Nelumbo nucifera HOM05D008138 ORTHO05D010043 3.5e-19 99.0 98 51.0
Eucgr.G01398 Eucalyptus grandis HOM05D008138 ORTHO05D010043 1.0e-18 97.4 94 52.1
Haze_14354 Corylus avellana HOM05D008138 ORTHO05D010043 8.5e-18 94.4 99 48.5
Cfa007720 Carpinus fangiana HOM05D008138 ORTHO05D010043 1.9e-17 93.2 99 47.5
ClCG05G023400 Citrullus lanatus HOM05D008138 ORTHO05D010043 1.2e-16 90.5 94 45.7
Nn1g02864 Nelumbo nucifera HOM05D008138 ORTHO05D010043 2.3e-15 86.3 90 46.7
Dinv16583 Davidia involucrata HOM05D008138 ORTHO05D010043 3.0e-15 85.9 77 55.8
Sed0002378 Sechium edule HOM05D008138 ORTHO05D010043 3.0e-15 85.9 96 43.8
Ciclev10033630m.g Citrus clementina HOM05D008138 ORTHO05D010043 8.8e-15 84.3 98 41.8
Glyma.01G069000 Glycine max HOM05D008138 ORTHO05D010043 4.4e-14 82.0 88 42.0
Glyma.02G125900 Glycine max HOM05D008138 ORTHO05D010043 4.4e-14 82.0 88 44.3
Lj2g0015438 Lotus japonicus HOM05D008138 ORTHO05D010043 4.4e-14 82.0 88 47.7
TAR629G0219 Trochodendron aralioides HOM05D008138 ORTHO05D010043 4.4e-14 82.0 89 42.7
Thecc.02G319500 Theobroma cacao HOM05D008138 ORTHO05D010043 1.7e-13 80.1 94 41.5
Cpa.g.sc53.120 Carica papaya HOM05D008138 ORTHO05D010043 8.2e-13 77.8 94 41.5
GSVIVG01010131001 Vitis vinifera HOM05D008138 ORTHO05D010043 1.4e-12 77.0 119 34.5
CSS0039010 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.8e-12 76.6 97 39.2
Cpa.g.sc9.360 Carica papaya HOM05D008138 ORTHO05D010043 1.8e-12 76.6 100 37.0
GSVIVG01010138001 Vitis vinifera HOM05D008138 ORTHO05D010043 2.4e-12 76.3 87 44.8
CSS0008280 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 9.1e-12 74.3 97 38.1
Potri.013G126000 Populus trichocarpa HOM05D008138 ORTHO05D010043 9.1e-12 74.3 89 42.7
CSS0008104 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.6e-11 73.6 97 38.1
CSS0025185 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.0e-11 73.2 97 38.1
CSS0030227 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.0e-11 73.2 97 38.1
CsaV3_5G033610 Cucumis sativus L. HOM05D008138 ORTHO05D010043 2.6e-11 72.8 75 45.3
CSS0015628 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 3.5e-11 72.4 97 38.1
QL10p055344 Quercus lobata HOM05D008138 ORTHO05D010043 3.5e-11 72.4 85 42.4
MSTRG.19633 Avicennia marina HOM05D008138 ORTHO05D010043 5.9e-11 71.6 91 39.6
CSS0048436 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 5.9e-11 71.6 97 37.1
QL08p042110 Quercus lobata HOM05D008138 ORTHO05D010043 1.0e-10 70.9 85 37.6
TPR.G2576 Trifolium pratense HOM05D008138 ORTHO05D010043 1.0e-10 70.9 88 37.5
CSS0046654 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.3e-10 70.5 97 37.1
CSS0004656 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.7e-10 70.1 97 36.1
QL10p055339 Quercus lobata HOM05D008138 ORTHO05D010043 1.9e-09 66.6 71 38.0
Sabra13G0105400 Salix brachista HOM05D008138 ORTHO05D010043 1.9e-09 66.6 113 33.6
Sopen01g005610 Solanum pennellii HOM05D056881 ORTHO05D010043 3.2e-09 65.9 94 33.0
Solyc01g010060.2 Solanum lycopersicum HOM05D056881 ORTHO05D010043 5.5e-09 65.1 94 33.0
CSS0022599 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.7e-08 62.8 95 35.8
Eucgr.B03099 Eucalyptus grandis HOM05D008138 ORTHO05D010043 3.6e-08 62.4 84 40.5
Ciclev10022667m.g Citrus clementina HOM05D017113 ORTHO05D019028 1.8e-07 60.1 108 30.6
QL10p055376 Quercus lobata HOM05D008138 ORTHO05D010043 6.7e-07 58.2 74 32.4
QL10p055147 Quercus lobata HOM05D008138 ORTHO05D010043 8.8e-07 57.8 90 32.2
Ciclev10022666m.g Citrus clementina HOM05D017113 ORTHO05D019028 1.2e-06 57.4 95 32.6
Prupe.1G297700 Prunus persica HOM05D008138 ORTHO05D010043 2.6e-06 56.2 106 33.0
Gorai.013G098900 Gossypium raimondii HOM05D033109 ORTHO05D010043 4.4e-06 55.5 61 41.0
PGSC0003DMG400007528 Solanum tuberosum HOM05D031546 ORTHO05D030641 4.4e-06 55.5 69 40.6
Rhsim09G0118800 Rhododendron simsii HOM05D008138 ORTHO05D010043 5.7e-06 55.1 100 35.0
Rhsim09G0118100 Rhododendron simsii HOM05D008138 ORTHO05D010043 9.7e-06 54.3 85 35.3
PGSC0003DMG400007527 Solanum tuberosum HOM05D031546 ORTHO05D030641 9.7e-06 54.3 66 39.4


User provided reference genes

Program Settings