Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 1.2e-85 319.7 150 100.0
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 2.3e-73 278.9 149 81.9
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 4.0e-73 278.1 149 83.2
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 4.4e-72 274.6 149 81.9
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 5.8e-72 274.2 149 81.9
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.3e-71 273.1 149 81.2
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.3e-71 273.1 149 83.2
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 1.7e-71 272.7 149 81.2
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 1.7e-71 272.7 149 80.5
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 2.2e-71 272.3 149 79.2
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 3.7e-71 271.6 149 80.5
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 3.7e-71 271.6 149 81.2
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 4.9e-71 271.2 149 81.2
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 8.3e-71 270.4 149 79.9
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.1e-70 270.0 149 80.5
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 1.1e-70 270.0 149 79.9
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 1.1e-70 270.0 149 79.9
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.4e-70 269.6 149 80.5
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 2.4e-70 268.9 149 79.2
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 3.2e-70 268.5 149 79.9
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 3.2e-70 268.5 149 80.5
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 4.1e-70 268.1 149 81.9
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 5.4e-70 267.7 149 79.2
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 5.4e-70 267.7 149 79.9
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 7.0e-70 267.3 149 77.2
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 7.0e-70 267.3 149 79.9
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 9.2e-70 266.9 149 79.9
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 9.2e-70 266.9 149 79.2
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 9.2e-70 266.9 149 77.2
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 1.2e-69 266.5 149 78.5
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 2.0e-69 265.8 149 78.5
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.7e-69 265.4 149 77.9
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.7e-69 265.4 149 77.9
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 4.6e-69 264.6 149 79.2
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 7.8e-69 263.8 149 75.8
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 7.8e-69 263.8 149 77.9
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 7.8e-69 263.8 149 77.9
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 1.0e-68 263.5 149 78.5
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.0e-68 263.5 149 78.5
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 1.3e-68 263.1 149 77.9
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 1.3e-68 263.1 149 76.5
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.7e-68 262.7 149 75.8
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 2.3e-68 262.3 149 77.9
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 3.0e-68 261.9 149 76.5
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 3.0e-68 261.9 149 78.5
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 3.0e-68 261.9 149 76.5
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 3.0e-68 261.9 149 77.2
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 5.0e-68 261.2 149 74.5
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 6.6e-68 260.8 149 76.5
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 8.6e-68 260.4 149 77.9
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.9e-67 259.2 149 77.2
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 3.3e-67 258.5 149 75.2
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 3.3e-67 258.5 149 77.2
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 4.3e-67 258.1 149 76.5
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 4.3e-67 258.1 149 75.8
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 9.5e-67 256.9 149 76.5
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 9.5e-67 256.9 149 76.5
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 9.5e-67 256.9 149 74.5
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 1.6e-66 256.1 149 76.5
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 3.6e-66 255.0 149 73.8
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 6.2e-66 254.2 149 74.5
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 6.2e-66 254.2 149 73.8
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 8.1e-66 253.8 149 76.5
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 1.1e-65 253.4 149 75.8
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 1.1e-65 253.4 149 75.2
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 1.8e-65 252.7 149 77.2
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 1.2e-64 250.0 149 73.8
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 1.2e-64 250.0 148 73.0
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 3.4e-64 248.4 149 75.8
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 7.5e-64 247.3 149 72.5
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 7.5e-64 247.3 149 73.8
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 4.9e-63 244.6 149 71.1
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 1.4e-62 243.0 149 72.5
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 3.2e-62 241.9 149 73.2
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 7.3e-59 230.7 148 67.6
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.2e-58 229.9 149 66.4
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.8e-57 226.1 148 66.9
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 4.0e-57 224.9 149 66.4
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 1.2e-56 223.4 126 79.4
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.2e-56 223.4 149 61.7
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 9.9e-56 220.3 149 66.4
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.9e-55 218.8 149 63.1
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 3.2e-54 215.3 149 64.4
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 4.1e-54 214.9 149 65.8
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 5.4e-54 214.5 126 74.6
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.1e-53 212.6 148 66.2
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.0e-52 208.8 148 63.5
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 7.3e-51 204.1 126 71.4
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 1.0e-36 157.1 88 73.9
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.7e-34 148.7 126 53.2
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 3.7e-26 122.1 74 74.3
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 4.8e-26 121.7 101 56.4
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 1.0e-23 114.0 100 57.0
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 2.9e-23 112.5 148 37.8
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.4e-22 110.2 58 81.0
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 9.3e-22 107.5 58 77.6
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 3.5e-21 105.5 57 75.4
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 4.3e-19 98.6 56 73.2
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 9.3e-14 80.9 126 38.9
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 1.3e-10 70.5 150 30.0
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 2.8e-10 69.3 149 28.9
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 4.8e-10 68.6 150 30.7
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 6.3e-10 68.2 157 30.6
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.4e-09 67.0 149 28.9
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 1.4e-09 67.0 158 30.4
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.8e-09 66.6 157 29.3
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 2.4e-09 66.2 149 28.9
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 4.1e-09 65.5 150 29.3
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 4.1e-09 65.5 149 28.2
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 4.1e-09 65.5 150 29.3
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 5.3e-09 65.1 149 27.5
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 5.3e-09 65.1 149 28.2
Pp3c6_26630 Physcomitrium patens HOM05D016606 ORTHO05D018318 5.3e-09 65.1 147 30.6
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 5.3e-09 65.1 157 28.7
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 5.3e-09 65.1 157 28.7
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 5.3e-09 65.1 149 28.2
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 6.9e-09 64.7 157 28.7
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 6.9e-09 64.7 150 28.7
CBR_g22374 Chara braunii HOM05D016606 ORTHO05D018318 9.1e-09 64.3 150 30.0
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 9.1e-09 64.3 157 28.0
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 9.1e-09 64.3 157 28.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.2e-08 63.9 150 28.0
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 1.5e-08 63.5 155 27.7
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 2.0e-08 63.2 151 28.5
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 2.0e-08 63.2 157 28.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.0e-08 63.2 157 28.7
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 2.6e-08 62.8 149 28.2
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.6e-08 62.8 149 26.8
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 2.6e-08 62.8 157 27.4
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 3.4e-08 62.4 157 28.7
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 3.4e-08 62.4 149 27.5
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 3.4e-08 62.4 158 27.2
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.4e-08 62.4 149 28.2
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 3.4e-08 62.4 157 28.0
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 4.5e-08 62.0 150 28.7
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 4.5e-08 62.0 157 27.4
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 4.5e-08 62.0 157 27.4
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 4.5e-08 62.0 155 29.0
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 4.5e-08 62.0 148 26.4
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 5.9e-08 61.6 155 29.0
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 5.9e-08 61.6 149 26.8
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 7.7e-08 61.2 150 29.3
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 7.7e-08 61.2 149 28.2
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 7.7e-08 61.2 157 28.0
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.3e-07 60.5 157 28.0
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 1.3e-07 60.5 155 27.7
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.3e-07 60.5 155 28.4
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 1.3e-07 60.5 155 28.4
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 1.3e-07 60.5 155 28.4
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.3e-07 60.5 155 28.4
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.7e-07 60.1 155 29.0
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 1.7e-07 60.1 157 28.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.7e-07 60.1 157 28.0
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 1.7e-07 60.1 157 28.7
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.7e-07 60.1 149 28.9
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 1.7e-07 60.1 158 27.2
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 2.2e-07 59.7 149 28.2
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 2.2e-07 59.7 149 26.8
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 2.9e-07 59.3 149 26.2
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 2.9e-07 59.3 150 28.7
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.8e-07 58.9 149 26.8
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 3.8e-07 58.9 172 26.7
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 3.8e-07 58.9 149 26.8
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 6.5e-07 58.2 150 28.0
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 6.5e-07 58.2 151 27.2
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 6.5e-07 58.2 149 27.5
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 6.5e-07 58.2 157 27.4
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 8.5e-07 57.8 152 27.0
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 8.5e-07 57.8 152 29.6
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 8.5e-07 57.8 159 28.3
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 1.1e-06 57.4 149 26.2
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.4e-06 57.0 149 27.5
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.9e-06 56.6 149 26.2
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 3.2e-06 55.8 157 25.5
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 3.2e-06 55.8 144 27.8
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 4.2e-06 55.5 149 26.8
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 5.5e-06 55.1 121 28.9
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 7.2e-06 54.7 150 26.7
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 7.2e-06 54.7 150 26.7
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 7.2e-06 54.7 150 26.7


User provided reference genes

Program Settings