Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.6e-46 189.1 97 100.0
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 3.3e-28 128.3 90 73.3
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 4.3e-28 127.9 90 73.3
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.8e-27 125.2 96 63.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.8e-27 124.4 95 68.4
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.5e-25 119.4 89 69.7
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.6e-25 117.1 95 60.0
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 7.6e-25 117.1 95 60.0
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.2e-24 115.5 92 62.0
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.2e-24 115.5 90 63.3
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.9e-24 115.2 92 62.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.9e-24 115.2 93 64.5
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 6.4e-24 114.0 88 64.8
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 8.4e-24 113.6 91 62.6
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 8.4e-24 113.6 89 68.5
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-23 113.2 89 67.4
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.2e-23 111.7 90 64.4
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.2e-23 111.3 90 64.4
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 5.5e-23 110.9 92 63.0
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 5.5e-23 110.9 92 63.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.2e-22 109.8 90 63.3
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.2e-22 109.8 92 58.7
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.2e-22 109.8 89 66.3
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.2e-22 109.8 90 63.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.6e-22 109.4 92 60.9
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.1e-22 109.0 91 62.6
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.7e-22 108.6 93 63.4
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 3.5e-22 108.2 92 59.8
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 4.6e-22 107.8 94 57.4
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 7.9e-22 107.1 88 59.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 7.9e-22 107.1 92 57.6
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.0e-21 106.7 90 58.9
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.3e-21 106.3 94 61.7
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.3e-21 105.5 92 58.7
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.3e-21 105.5 89 62.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 3.0e-21 105.1 98 61.2
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 3.0e-21 105.1 92 59.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 3.9e-21 104.8 88 60.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 5.1e-21 104.4 91 58.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 6.7e-21 104.0 95 56.8
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-20 103.2 95 61.1
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.5e-20 102.8 90 61.1
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.9e-20 102.4 88 61.4
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 3.3e-20 101.7 90 57.8
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.3e-20 101.3 95 55.8
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 4.3e-20 101.3 87 62.1
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 7.4e-20 100.5 97 54.6
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 7.4e-20 100.5 93 57.0
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 9.6e-20 100.1 88 59.1
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.3e-19 99.8 88 59.1
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.3e-19 99.8 92 53.3
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.6e-19 99.4 106 53.8
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.6e-19 99.4 92 55.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.6e-19 99.4 90 60.0
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.1e-19 99.0 90 58.9
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.1e-19 99.0 90 55.6
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 4.8e-19 97.8 92 56.5
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.8e-19 97.8 90 53.3
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 8.2e-19 97.1 88 62.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 8.2e-19 97.1 92 55.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.8e-18 95.9 95 50.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.8e-18 95.9 92 54.3
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.4e-18 95.5 90 51.1
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.4e-18 95.5 90 51.1
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 2.4e-18 95.5 90 52.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.4e-18 95.5 90 56.7
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.0e-18 94.7 90 52.2
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 4.0e-18 94.7 90 52.2
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 4.0e-18 94.7 90 52.2
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 6.9e-18 94.0 96 53.1
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 9.0e-18 93.6 86 54.7
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.2e-17 93.2 90 50.0
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.5e-17 92.8 92 52.2
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.5e-17 92.8 86 54.7
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.5e-17 92.8 90 58.9
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 5.8e-17 90.9 86 53.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 7.6e-17 90.5 90 56.7
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.3e-16 89.7 87 54.0
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.9e-16 88.6 95 48.4
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 3.8e-16 88.2 92 56.5
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 4.9e-16 87.8 90 53.3
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 6.5e-16 87.4 92 52.2
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 8.4e-16 87.0 91 57.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 1.1e-15 86.7 95 49.5
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.4e-15 86.3 90 48.9
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.9e-15 85.9 95 47.4
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-15 85.9 92 51.1
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.9e-15 85.9 89 51.7
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.2e-15 85.1 90 55.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 3.2e-15 85.1 89 53.9
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 3.2e-15 85.1 91 56.0
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 9.3e-15 83.6 93 54.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.2e-14 83.2 90 51.1
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-14 83.2 91 54.9
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 2.7e-14 82.0 92 53.3
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 7.9e-14 80.5 91 46.2
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.0e-13 80.1 95 48.4
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.3e-13 79.7 95 48.4
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.8e-13 79.3 87 51.7
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 2.3e-13 79.0 95 48.4
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 3.9e-13 78.2 90 50.0
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 6.7e-13 77.4 91 52.7
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 6.7e-13 77.4 87 50.6
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.5e-12 76.3 86 48.8
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.9e-12 75.9 90 47.8
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.9e-12 75.9 86 50.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.5e-12 75.5 87 48.3
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.3e-12 75.1 88 45.5
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-12 75.1 91 48.4
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 3.3e-12 75.1 86 50.0
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.3e-12 74.7 93 47.3
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.3e-12 74.7 87 47.1
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 9.7e-12 73.6 86 47.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.3e-11 73.2 85 50.6
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 6.3e-11 70.9 96 39.6
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.4e-10 69.7 91 46.2
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 9.0e-10 67.0 97 37.1
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.6e-09 65.5 91 48.4
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.0e-08 63.5 85 43.5
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.3e-08 63.2 89 48.3
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.7e-08 62.8 90 42.2
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 2.9e-08 62.0 89 43.8
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.9e-08 62.0 91 42.9
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 6.5e-08 60.8 86 40.7
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.1e-07 60.1 91 45.1
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.5e-07 58.9 65 47.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.5e-07 58.9 93 41.9
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 2.5e-07 58.9 91 39.6
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 4.2e-07 58.2 50 54.0
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.2e-07 57.4 95 38.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 9.3e-07 57.0 94 41.5
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.6e-06 55.1 86 38.4


User provided reference genes

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