Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.3e-187 658.7 317 100.0
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.3e-153 546.6 315 79.0
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 4.8e-153 544.7 316 77.8
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 6.3e-153 544.3 315 79.4
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 4.5e-151 538.1 315 77.8
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.0e-150 537.0 318 77.4
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.3e-150 536.6 315 77.8
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 8.5e-150 533.9 316 76.9
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.5e-149 532.3 316 77.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 9.4e-149 530.4 320 76.6
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 9.4e-149 530.4 316 75.9
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 9.4e-149 530.4 316 76.6
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.2e-148 530.0 321 76.3
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.6e-148 529.6 318 75.8
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.6e-148 529.6 321 76.3
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.1e-148 529.3 315 75.6
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.7e-148 528.9 315 77.1
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.6e-148 528.5 321 76.0
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 6.1e-148 527.7 318 76.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 8.0e-148 527.3 318 76.7
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-147 526.9 315 76.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.0e-147 526.9 321 77.3
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.8e-147 526.2 320 76.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 5.2e-147 524.6 316 76.3
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 5.2e-147 524.6 315 75.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 8.8e-147 523.9 321 77.6
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 8.8e-147 523.9 315 75.2
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.2e-146 523.5 315 75.9
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.5e-146 523.1 315 75.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.4e-146 521.5 316 76.3
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.7e-146 521.2 315 75.2
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 7.5e-146 520.8 315 75.2
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.3e-145 520.0 316 74.7
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.3e-145 520.0 316 75.9
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.8e-145 518.8 316 75.3
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.8e-145 518.8 315 74.9
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.8e-145 518.8 315 74.6
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.8e-145 518.1 315 75.2
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 6.3e-145 517.7 317 76.0
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 8.3e-145 517.3 316 74.7
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 8.3e-145 517.3 316 75.0
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 8.3e-145 517.3 320 75.0
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.4e-144 516.5 316 74.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.8e-144 516.2 315 74.0
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.0e-143 512.7 315 74.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 3.5e-143 511.9 316 73.7
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 5.9e-143 511.1 316 75.3
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 7.7e-143 510.8 316 74.7
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.3e-142 510.0 316 74.1
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.7e-142 509.6 316 73.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.2e-142 509.2 315 74.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.8e-142 508.4 303 77.6
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 5.0e-142 508.1 316 75.3
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 5.0e-142 508.1 315 74.6
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 6.5e-142 507.7 315 75.2
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 8.5e-142 507.3 317 73.8
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 8.5e-142 507.3 317 73.8
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.5e-141 506.5 318 72.6
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-141 506.5 316 73.4
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.5e-141 505.8 322 72.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 3.2e-141 505.4 369 65.9
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.2e-141 505.4 316 73.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 7.2e-141 504.2 318 74.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 9.4e-141 503.8 318 74.2
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 9.4e-141 503.8 369 65.6
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.1e-140 502.7 316 72.2
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.7e-140 502.3 315 73.3
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.7e-140 502.3 338 70.1
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 3.6e-140 501.9 317 73.8
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 6.1e-140 501.1 316 72.2
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-139 500.4 316 74.7
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.0e-139 500.4 316 74.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.4e-139 500.0 316 74.7
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.4
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.4
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.8e-139 497.3 315 72.7
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 8.8e-139 497.3 315 72.1
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.2e-138 496.9 316 72.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.5e-138 496.5 315 73.0
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-138 496.5 315 71.4
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.5e-138 496.5 315 71.4
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.6e-138 495.7 317 71.6
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 5.7e-138 494.6 315 73.3
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.5e-138 494.2 315 72.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 9.8e-138 493.8 316 72.2
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 9.8e-138 493.8 318 72.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.3e-137 493.4 331 67.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.3e-137 493.4 316 71.8
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.3e-137 493.4 318 72.6
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.3e-137 493.4 313 71.2
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 2.8e-137 492.3 316 69.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.8e-137 492.3 315 71.7
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.7e-137 491.9 317 72.2
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 6.3e-137 491.1 316 72.8
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.4e-136 490.0 316 72.5
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.4e-136 490.0 307 73.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.8e-136 489.6 316 72.5
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.4e-136 489.2 318 73.3
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 4.1e-136 488.4 316 72.2
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 7.0e-136 487.6 315 72.1
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.2e-135 486.9 315 71.1
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-135 485.0 316 71.8
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.0e-134 483.8 316 71.8
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 6.6e-134 481.1 317 71.0
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.1e-133 480.3 317 70.0
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.1e-133 480.3 318 70.8
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.3e-133 477.6 315 70.2
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.1e-132 476.1 266 83.1
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.8e-132 475.7 320 71.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.3e-131 472.6 317 67.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.0e-130 469.5 323 69.0
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.4e-130 468.4 315 70.2
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.3e-129 466.8 292 71.6
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.7e-129 466.5 315 68.9
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 7.0e-128 461.1 389 58.1
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-127 460.3 318 69.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.1e-125 453.8 336 64.3
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.5e-125 450.7 404 56.4
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.6e-124 449.9 315 66.0
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.0e-123 447.2 315 65.1
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.2e-123 444.9 289 73.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 3.4e-122 442.2 326 65.0
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.9e-121 439.1 289 72.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.5e-119 432.2 315 65.1
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 3.9e-118 428.7 317 64.0
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 5.0e-118 428.3 336 61.0
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.2e-114 417.2 279 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 5.4e-112 408.3 318 61.3
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.0e-110 404.1 292 68.5
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.0e-110 404.1 332 59.0
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.3e-109 399.1 323 61.6
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 3.1e-107 392.5 303 65.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.0e-107 392.1 317 58.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 7.6e-106 387.9 321 57.3
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.7e-105 386.7 320 61.2
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 4.9e-105 385.2 242 74.4
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.9e-101 373.2 315 55.9
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.8e-99 366.7 225 75.6
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 7.8e-95 351.3 360 48.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 4.0e-83 312.4 198 71.2
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 3.4e-82 309.3 185 76.8
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.8e-82 308.5 182 77.5
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 6.2e-76 288.5 218 61.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.8e-70 270.4 187 69.0
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.7e-70 268.5 305 49.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 5.3e-67 258.8 165 70.3
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.1e-64 251.1 144 79.9
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 6.1e-63 245.4 151 74.8
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.1e-56 224.6 140 72.1
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 9.1e-51 204.9 147 65.3
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.4e-43 180.3 125 68.0
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 3.8e-41 172.9 100 75.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.9e-40 170.6 111 70.3
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 7.2e-40 168.7 124 66.1
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 8.5e-33 145.2 90 76.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.9e-32 144.1 92 70.7
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 6.1e-31 139.0 105 65.7
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.8e-30 137.5 69 81.2
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 4.1e-27 126.3 75 74.7
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.7e-26 123.6 90 62.2
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 5.0e-25 119.4 169 43.2
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 8.6e-25 118.6 74 73.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.8e-22 110.9 67 70.1
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.1e-19 101.7 57 75.4
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.1e-19 100.1 72 65.3
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.4e-11 74.7 43 72.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.2e-10 71.6 58 55.2
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.0e-09 66.2 80 50.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.1e-07 60.8 56 53.6
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 8.0e-07 58.9 96 42.7


User provided reference genes

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