Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 0.0e+00 1277.3 678 100.0
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.2e-124 451.4 680 44.3
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.4e-109 400.6 719 45.6
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.7e-108 397.1 687 42.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 5.6e-106 389.4 731 42.8
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 6.6e-99 365.9 749 41.8
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.4e-96 358.2 744 43.1
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.7e-94 350.1 724 43.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 6.0e-92 342.8 700 43.6
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 4.4e-87 326.6 693 39.1
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 4.4e-87 326.6 684 42.4
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 9.9e-87 325.5 680 42.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.1e-85 322.0 783 37.2
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.2e-84 318.5 684 42.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.1e-77 293.5 716 39.1
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.3e-75 288.5 732 35.5
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 3.9e-75 287.0 734 38.1
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 5.1e-75 286.6 684 41.7
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 6.6e-75 286.2 691 34.9
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.5e-74 285.0 645 42.6
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.9e-74 284.6 697 40.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.5e-74 284.3 722 35.5
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 5.6e-74 283.1 674 39.0
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 5.6e-74 283.1 718 37.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 5.6e-74 283.1 718 37.2
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.3e-74 282.7 666 37.5
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.1e-73 279.3 728 36.5
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 9.0e-72 275.8 668 36.2
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 4.4e-71 273.5 662 40.3
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 9.9e-71 272.3 720 40.0
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.9e-70 270.8 723 38.7
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-69 267.3 738 34.4
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.2e-69 266.9 684 35.8
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.1e-69 266.2 709 38.1
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 4.6e-68 263.5 669 34.8
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.5e-66 258.5 270 55.9
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.5e-66 257.7 396 46.0
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.6e-65 253.8 635 34.8
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.4e-64 251.9 697 38.2
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.5e-63 248.4 660 39.2
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 4.5e-63 246.9 590 37.3
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.3e-62 245.4 686 34.0
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.4e-61 240.0 703 38.3
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.6e-60 238.4 692 38.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 2.1e-60 238.0 690 38.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.8e-59 235.0 662 34.1
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.9e-59 233.8 671 38.2
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 6.7e-59 233.0 662 36.7
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 9.6e-58 229.2 684 32.9
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.3e-57 228.8 658 38.6
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.4e-56 224.6 674 37.4
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.5e-55 221.9 669 36.5
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.4e-55 220.7 672 36.9
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 4.5e-55 220.3 667 35.7
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.8e-55 219.9 686 35.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 9.9e-55 219.2 687 35.5
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.7e-54 218.4 667 35.7
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.9e-54 217.6 719 31.4
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 4.9e-54 216.9 677 35.3
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 8.4e-54 216.1 666 33.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.4e-53 214.5 670 37.5
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 9.3e-53 212.6 668 34.3
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.8e-51 208.4 701 35.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.0e-51 207.6 639 32.9
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 3.0e-51 207.6 650 35.7
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 5.1e-51 206.8 671 36.5
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-50 204.5 676 37.0
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 5.6e-50 203.4 664 33.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.6e-49 201.8 679 32.0
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 6.2e-49 199.9 642 31.5
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 6.9e-48 196.4 677 33.2
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.5e-47 195.3 675 31.6
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.3e-46 192.2 180 68.9
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.8e-46 190.7 651 33.0
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 4.9e-46 190.3 662 29.0
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.4e-45 188.7 668 34.3
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 3.2e-45 187.6 672 30.8
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 2.7e-44 184.5 680 30.7
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.3e-43 182.2 668 34.9
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.3e-43 181.4 682 31.5
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.3e-41 175.6 678 33.8
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.3e-41 175.6 656 30.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.8e-40 171.8 650 29.8
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 2.4e-40 171.4 645 34.1
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 9.0e-40 169.5 673 30.2
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 4.5e-39 167.2 173 57.8
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 7.6e-39 166.4 576 31.8
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 7.6e-39 166.4 666 27.3
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 7.6e-39 166.4 165 57.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.7e-38 165.2 631 33.6
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.8e-38 164.1 677 34.6
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.5e-37 161.4 255 44.3
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 3.2e-37 161.0 224 47.3
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 3.2e-37 161.0 250 43.2
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 7.2e-37 159.8 689 30.9
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.2e-36 159.1 167 58.7
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.7e-36 157.9 681 33.0
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 4.6e-36 157.1 655 29.0
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.8e-35 155.2 201 47.8
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.9e-35 154.1 557 30.2
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 5.1e-35 153.7 692 27.3
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 8.8e-35 152.9 679 32.1
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 4.3e-34 150.6 172 59.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 4.1e-32 144.1 638 27.7
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.2e-31 142.5 560 34.5
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.2e-31 142.5 162 66.7
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.5e-31 142.1 162 58.6
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.6e-31 141.4 168 63.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.7e-31 139.8 168 51.8
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.0e-30 139.4 212 42.9
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.3e-30 139.0 678 26.3
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 6.5e-30 136.7 182 45.6
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.1e-29 136.0 96 71.9
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.4e-29 135.6 692 31.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 7.2e-29 133.3 157 63.1
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 9.4e-29 132.9 245 41.2
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.7e-28 131.3 164 62.2
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 2.7e-28 131.3 134 58.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 3.6e-28 131.0 192 59.4
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.4e-27 129.0 173 54.3
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.0e-27 127.9 162 47.5
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.1e-26 125.9 177 46.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.2e-25 121.7 198 51.5
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 8.2e-25 119.8 659 30.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 6.9e-24 116.7 153 48.4
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.5e-23 115.5 666 27.5
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.0e-22 112.8 663 29.3
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.2e-22 111.7 655 29.3
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-22 111.7 91 64.8
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 8.5e-22 109.8 69 81.2
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-21 109.4 89 64.0
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.1e-21 109.4 89 67.4
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.4e-21 109.0 654 29.4
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.5e-21 108.2 95 62.1
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 5.5e-21 107.1 541 27.7
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 7.2e-21 106.7 152 48.7
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 7.2e-21 106.7 91 63.7
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.1e-20 105.1 87 64.4
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.4e-19 102.4 85 63.5
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.8e-17 94.7 165 41.2
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 8.2e-17 93.2 637 27.9
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.2e-15 89.4 98 53.1
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.7e-14 85.5 122 45.9
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 3.6e-12 77.8 544 27.0


User provided reference genes

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