Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.2e-156 555.8 331 100.0
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 6.1e-82 308.5 329 69.3
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 8.8e-81 304.7 329 63.5
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.5e-80 303.9 329 69.6
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.2e-79 300.1 329 68.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.4e-78 297.4 330 68.2
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.4e-78 296.6 331 60.4
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.3e-78 295.4 329 69.6
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 9.1e-78 294.7 328 64.0
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.2e-75 285.8 335 51.9
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.1e-74 282.0 327 58.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.1e-74 282.0 327 58.4
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.0e-73 279.3 327 57.8
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 5.7e-72 275.4 328 57.9
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.8e-71 273.1 337 64.7
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 2.8e-71 273.1 334 58.7
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 4.1e-70 269.2 337 59.6
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.1e-70 268.1 327 61.8
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-69 267.7 328 56.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 7.7e-69 265.0 332 58.1
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.7e-69 265.0 327 57.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 8.5e-68 261.5 337 57.3
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.5e-67 260.0 328 48.8
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 7.2e-67 258.5 338 62.7
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.0e-65 254.6 335 60.0
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 5.7e-64 248.8 308 66.2
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.4e-62 244.2 327 56.0
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.2e-59 233.0 348 60.9
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.0e-57 226.5 341 48.1
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.0e-56 223.8 326 53.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 2.0e-56 223.8 329 55.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 2.0e-56 223.8 341 51.6
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.0e-56 223.8 339 50.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.4e-56 223.0 327 47.4
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.2e-55 220.3 263 50.6
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 2.8e-55 219.9 342 56.1
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 2.8e-55 219.9 343 58.9
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.9e-51 207.2 341 57.2
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.6e-51 205.7 342 43.3
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.2e-50 204.5 358 56.4
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.6e-50 204.1 329 51.4
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 4.7e-50 202.6 344 50.0
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 3.4e-48 196.4 312 51.9
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.3e-47 194.5 329 55.0
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.3e-47 194.5 329 51.1
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 8.3e-47 191.8 355 48.7
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.1e-46 189.5 339 47.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 7.0e-46 188.7 349 48.7
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.7e-45 186.8 311 50.8
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.7e-45 186.8 311 50.8
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.9e-45 185.7 267 45.3
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 6.6e-44 182.2 343 40.2
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.6e-44 181.8 331 49.8
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.5e-43 181.0 316 46.2
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.9e-43 180.6 321 44.2
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.9e-43 180.6 321 44.2
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.2e-42 177.9 327 37.6
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.6e-42 177.6 312 51.0
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.1e-42 177.2 350 47.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.1e-42 177.2 332 56.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.1e-42 177.2 315 46.7
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.6e-42 176.4 334 42.5
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.0e-42 175.3 332 56.0
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.0e-41 174.9 334 55.7
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.0e-41 174.9 334 55.7
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.8e-41 174.1 356 38.2
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 3.1e-41 173.3 360 38.9
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-40 171.4 314 45.5
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.8e-40 169.1 335 54.3
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.9e-39 166.8 335 46.9
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 4.9e-39 166.0 336 42.3
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 6.4e-39 165.6 356 44.7
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.3e-39 165.2 356 49.7
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.3e-39 165.2 356 49.7
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.3e-39 165.2 356 49.7
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-38 164.5 327 38.2
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.2e-38 163.3 335 46.3
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 5.4e-38 162.5 314 49.0
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.6e-37 161.0 321 45.8
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 2.0e-37 160.6 336 42.6
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.6e-37 159.5 311 46.6
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 6.0e-37 159.1 332 52.7
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.7e-36 157.5 300 42.7
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 3.9e-36 156.4 336 36.3
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 6.6e-36 155.6 326 39.6
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.1e-35 154.8 380 44.5
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 9.5e-35 151.8 382 44.5
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 2.8e-34 150.2 344 51.7
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-33 147.1 246 53.3
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 3.1e-33 146.7 352 46.9
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 4.0e-33 146.4 339 42.8
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.0e-32 144.1 341 34.9
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.8e-32 141.7 342 33.3
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 9.8e-32 141.7 337 43.6
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 9.8e-32 141.7 226 54.4
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.7e-31 141.0 320 45.0
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.2e-31 140.6 163 52.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.2e-31 140.6 325 49.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 3.7e-31 139.8 325 43.7
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.4e-31 139.0 345 33.6
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 8.3e-31 138.7 346 45.4
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 5.4e-30 136.0 338 34.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.4e-30 136.0 340 37.1
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.2e-29 134.8 338 46.4
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-29 134.4 355 47.3
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.6e-29 134.4 357 46.5
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-29 134.0 355 47.3
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-29 134.0 351 47.3
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.1e-29 134.0 355 47.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.7e-29 133.7 329 44.7
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.3e-28 130.6 352 45.7
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.0e-28 130.2 207 55.6
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.0e-28 130.2 353 45.9
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 3.9e-28 129.8 358 47.2
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.9e-28 129.8 350 42.0
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.5e-27 127.9 354 43.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 5.6e-27 125.9 255 57.3
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 9.5e-27 125.2 324 41.0
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.8e-26 123.6 353 44.8
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 4.7e-26 122.9 353 45.3
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.8e-25 120.9 351 44.2
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.8e-25 120.9 351 44.2
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 5.2e-25 119.4 229 38.4
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.2e-24 118.2 339 38.3
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.6e-24 117.1 350 46.3
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 3.4e-24 116.7 353 45.3
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.3e-23 114.8 322 34.2
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 4.9e-23 112.8 351 43.3
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.4e-23 112.5 332 32.2
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 6.4e-23 112.5 342 36.8
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.1e-22 111.7 316 36.4
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.1e-22 111.7 341 35.2
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 5.4e-22 109.4 338 37.3
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 7.1e-22 109.0 373 44.0
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 9.2e-22 108.6 341 44.3
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.1e-21 107.5 306 48.7
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.3e-19 99.8 324 40.7
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.1e-18 97.4 338 32.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-17 94.7 326 31.0
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.1e-17 93.6 332 29.8
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 6.9e-17 92.4 318 45.0
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 4.4e-16 89.7 340 38.8
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.8e-15 86.7 123 44.7
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.9e-15 86.3 123 45.5
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 2.5e-11 73.9 297 28.6
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.3e-11 73.6 268 39.9
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.3e-11 73.2 70 60.0
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 5.6e-11 72.8 270 40.4
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.3e-11 72.4 149 36.9
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.3e-10 71.6 325 32.0
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.8e-09 67.8 331 28.1
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 4.0e-09 66.6 64 54.7
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 2.9e-07 60.5 150 36.0
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 3.8e-07 60.1 110 41.8


User provided reference genes

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