Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.5e-56 220.3 114 100.0
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.4e-46 188.7 108 90.7
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.5e-45 184.9 108 87.0
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 8.6e-44 180.3 108 85.2
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 4.3e-43 177.9 108 84.3
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 9.5e-43 176.8 108 84.3
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 6.2e-42 174.1 108 81.5
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 6.2e-42 174.1 108 80.6
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 8.1e-42 173.7 108 81.5
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 8.1e-42 173.7 108 80.6
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.1e-41 173.3 108 81.5
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-41 173.3 108 79.6
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.8e-41 172.6 108 78.7
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.8e-41 172.6 108 78.7
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.8e-41 172.6 108 79.6
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 3.1e-41 171.8 108 81.5
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 3.1e-41 171.8 108 78.7
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 3.1e-41 171.8 108 78.7
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.1e-41 171.8 108 78.7
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 4.0e-41 171.4 108 78.7
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.2e-41 171.0 108 82.4
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.2e-41 171.0 108 77.8
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 5.2e-41 171.0 108 77.8
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.2e-40 169.9 108 81.5
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.2e-40 169.9 108 77.8
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-40 169.9 108 77.8
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.2e-40 169.9 108 81.5
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.5e-40 169.5 108 78.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.5e-40 169.5 108 80.6
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 77.8
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 76.9
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 76.9
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 76.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 77.8
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 80.6
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 2.6e-40 168.7 108 79.6
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.4e-40 168.3 108 78.7
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 5.8e-40 167.5 108 80.6
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 5.8e-40 167.5 108 78.7
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 5.8e-40 167.5 108 76.9
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 7.5e-40 167.2 108 76.9
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 7.5e-40 167.2 108 78.7
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 9.8e-40 166.8 108 78.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 9.8e-40 166.8 108 78.7
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.3e-39 166.4 108 80.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.3e-39 166.4 108 77.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.7e-39 166.0 108 78.7
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 2.9e-39 165.2 108 75.9
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 2.9e-39 165.2 108 76.9
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 2.9e-39 165.2 108 76.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 2.9e-39 165.2 108 75.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.9e-39 165.2 108 76.9
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.9e-39 165.2 108 77.8
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.7e-39 164.9 108 77.8
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.9e-39 164.5 108 76.9
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.9e-39 164.5 108 75.9
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 4.9e-39 164.5 108 75.9
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.4e-39 164.1 108 76.9
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.4e-39 164.1 108 76.9
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 6.4e-39 164.1 108 77.8
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.1e-38 163.3 108 74.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.4e-38 162.9 108 75.9
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.4e-38 162.9 108 76.9
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.4e-38 162.9 108 76.9
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.9e-38 162.5 108 75.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.4e-38 162.2 108 76.9
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.2e-38 161.8 108 76.9
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 5.4e-38 161.0 108 75.0
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 5.4e-38 161.0 108 75.9
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 7.1e-38 160.6 108 75.0
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 7.1e-38 160.6 108 73.1
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 9.2e-38 160.2 108 75.0
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.2e-37 159.8 108 74.1
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.2e-37 159.8 111 72.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.2e-37 159.8 108 75.0
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.6e-37 159.5 108 70.4
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.6e-37 159.5 108 73.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.1e-37 159.1 108 74.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.7e-37 158.7 108 69.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.7e-37 158.7 108 75.0
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.7e-37 158.7 108 76.9
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 3.5e-37 158.3 108 70.4
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.5e-37 158.3 108 75.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 4.6e-37 157.9 108 70.4
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.0e-37 157.5 108 75.0
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 7.8e-37 157.1 108 75.9
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 7.8e-37 157.1 108 73.1
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.0e-36 156.8 108 72.2
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.0e-36 156.8 108 71.3
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.0e-36 156.8 108 70.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.7e-36 156.0 108 71.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.3e-36 155.6 108 75.0
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 2.3e-36 155.6 108 70.4
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 3.9e-36 154.8 108 70.4
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 6.6e-36 154.1 108 70.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 6.6e-36 154.1 108 70.4
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 8.6e-36 153.7 108 71.3
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.1e-35 153.3 108 67.6
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.1e-35 153.3 108 71.3
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.9e-35 152.5 108 70.4
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 3.3e-35 151.8 108 69.4
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 3.3e-35 151.8 108 69.4
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 3.3e-35 151.8 108 69.4
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 7.3e-35 150.6 108 69.4
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.2e-34 149.8 108 68.5
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.8e-34 148.7 108 68.5
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 8.1e-34 147.1 108 66.7
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 8.1e-34 147.1 108 67.6
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.1e-33 146.7 93 80.6
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.3e-33 145.6 108 67.6
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 5.2e-33 144.4 108 67.6
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.5e-32 142.9 108 64.8
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.5e-32 142.9 108 63.9
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 5.8e-32 141.0 110 63.6
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 7.6e-32 140.6 108 63.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 4.9e-31 137.9 108 62.0
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 2.4e-30 135.6 108 61.1
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.3e-28 129.0 92 71.7
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 8.6e-28 127.1 100 64.0
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.9e-27 125.9 75 86.7
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 2.5e-27 125.6 108 59.3
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 3.3e-27 125.2 108 59.3
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.6e-27 124.4 75 85.3
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.1e-25 120.2 88 70.5
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.8e-25 119.4 108 58.3
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 9.9e-24 113.6 85 64.7
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.1e-22 110.2 79 68.4
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.9e-22 109.4 96 55.2
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.1e-21 105.9 81 61.7
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.3e-20 103.2 111 50.5
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 3.0e-20 102.1 68 77.9
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 7.3e-19 97.4 128 43.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.1e-17 92.0 114 44.7
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.6e-16 89.0 139 41.0
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.2e-14 81.6 119 44.5


User provided reference genes

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