Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 3.7e-108 394.8 192 100.0
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 1.4e-75 286.6 189 76.2
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 1.6e-74 283.1 187 74.3
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 1.5e-72 276.6 178 75.8
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 3.3e-72 275.4 183 73.2
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 3.3e-72 275.4 193 71.0
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 4.3e-72 275.0 182 76.4
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 5.6e-72 274.6 190 70.0
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 2.8e-71 272.3 184 70.7
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 4.8e-71 271.6 191 70.7
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 1.4e-70 270.0 193 69.9
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 1.4e-70 270.0 193 68.9
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 1.8e-70 269.6 182 72.5
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 1.8e-70 269.6 171 76.0
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 3.1e-70 268.9 186 73.1
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 4.0e-70 268.5 193 68.4
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 6.9e-70 267.7 179 71.5
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 9.0e-70 267.3 192 69.3
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 1.2e-69 266.9 176 72.7
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 1.2e-69 266.9 187 70.1
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 1.2e-69 266.9 198 67.2
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 1.5e-69 266.5 190 70.0
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 5.8e-69 264.6 149 81.9
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 1.0e-68 263.8 190 67.4
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 1.0e-68 263.8 187 69.0
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 1.3e-68 263.5 187 69.0
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 1.3e-68 263.5 190 67.9
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 1.7e-68 263.1 189 68.8
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 2.2e-68 262.7 193 67.4
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 3.8e-68 261.9 176 73.3
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 6.5e-68 261.2 186 70.4
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 1.1e-67 260.4 199 65.3
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 1.9e-67 259.6 199 65.3
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 2.5e-67 259.2 189 65.6
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 2.5e-67 259.2 179 70.4
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 4.2e-67 258.5 188 68.6
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 9.3e-67 257.3 177 70.1
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 1.2e-66 256.9 198 66.7
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 1.2e-66 256.9 159 78.0
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 1.6e-66 256.5 199 64.3
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 3.5e-66 255.4 167 73.1
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 3.5e-66 255.4 193 65.3
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 3.0e-65 252.3 188 68.1
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 3.0e-65 252.3 191 67.5
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 3.9e-65 251.9 188 65.4
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 1.1e-64 250.4 168 72.0
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 1.5e-64 250.0 189 63.5
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 3.3e-64 248.8 191 66.0
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 3.3e-64 248.8 189 63.0
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 9.7e-64 247.3 183 66.1
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 9.7e-64 247.3 178 66.3
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 1.3e-63 246.9 182 68.7
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 6.3e-63 244.6 192 66.7
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 8.2e-63 244.2 175 66.3
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 1.1e-62 243.8 172 66.9
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 2.4e-62 242.7 175 66.9
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 2.4e-62 242.7 156 74.4
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 3.1e-62 242.3 186 63.4
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 4.1e-62 241.9 194 65.5
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 5.3e-62 241.5 194 61.3
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 6.9e-62 241.1 161 72.0
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 1.5e-61 240.0 175 65.1
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 2.6e-61 239.2 163 71.2
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 4.5e-61 238.4 187 65.8
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 1.0e-60 237.3 198 60.6
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 1.3e-60 236.9 188 62.2
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 1.3e-60 236.9 138 79.7
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 1.7e-60 236.5 176 64.8
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 5.0e-60 235.0 206 58.3
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 8.5e-60 234.2 196 60.7
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 8.5e-60 234.2 139 78.4
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 1.1e-59 233.8 175 64.6
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 1.1e-59 233.8 175 64.6
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 1.1e-59 233.8 175 64.6
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 1.1e-59 233.8 175 64.6
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 1.4e-59 233.4 206 57.8
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 3.2e-59 232.3 188 64.4
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 4.2e-59 231.9 207 58.9
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 5.5e-59 231.5 172 65.1
Gohir.A07G181100 Gossypium hirsutum HOM05D007258 ORTHO05D008852 6.1e-58 228.0 193 59.6
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 1.5e-56 223.4 191 62.8
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 1.9e-56 223.0 146 71.9
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.3e-56 222.2 212 55.2
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 9.7e-56 220.7 217 56.2
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 6.3e-55 218.0 170 62.9
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 6.3e-55 218.0 170 62.9
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.8e-54 216.5 163 63.8
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 9.1e-54 214.2 172 62.8
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 3.4e-53 212.2 136 69.1
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 8.5e-52 207.6 185 57.8
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 2.1e-50 203.0 152 65.8
Nitab4.5_0005120g0080 Nicotiana tabacum HOM05D007258 ORTHO05D008852 4.8e-47 191.8 202 56.9
MD17G1063300 Malus domestica HOM05D007258 ORTHO05D008852 8.2e-47 191.0 113 72.6
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 1.1e-46 190.7 184 58.2
Actinidia17595 Actinidia chinensis HOM05D007258 ORTHO05D008852 4.2e-43 178.7 183 52.5
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 2.7e-42 176.0 150 59.3
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 3.0e-41 172.6 191 54.5
MD09G1072600 Malus domestica HOM05D007258 ORTHO05D008852 1.7e-39 166.8 165 53.3
CBR_g1012 Chara braunii HOM05D007258 ORTHO05D008852 1.9e-35 153.3 142 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3322 Anthoceros agrestis HOM05D007258 ORTHO05D008852 1.8e-33 146.7 152 49.3
Atru.BG.153.p Acer truncatum HOM05D007258 ORTHO05D008852 1.5e-32 143.7 83 77.1
ClCG11G004890 Citrullus lanatus HOM05D007258 ORTHO05D008852 1.7e-28 130.2 67 82.1
vmacro18138 Vaccinium macrocarpon HOM05D007258 ORTHO05D008852 2.0e-24 116.7 108 62.0
BcaB03g16148 Brassica carinata HOM05D007258 ORTHO05D008852 5.9e-21 105.1 84 57.1
SEGI_23358 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 1.3e-20 104.0 121 53.7
ATR0037G004 Amborella trichopoda HOM05D007258 ORTHO05D008852 2.9e-20 102.8 53 83.0
Actinidia26259 Actinidia chinensis HOM05D007258 ORTHO05D008852 6.6e-20 101.7 94 62.8
ATR0037G029 Amborella trichopoda HOM05D007258 ORTHO05D008852 8.9e-17 91.3 97 56.7
Lsat_1_v5_gn_4_141000 Lactuca sativa HOM05D007258 ORTHO05D008852 4.4e-16 89.0 175 35.4
Lsat_1_v5_gn_7_113001 Lactuca sativa HOM05D007258 ORTHO05D008852 1.2e-13 80.9 63 58.7
Migut.I00106 Erythranthe guttata HOM05D007258 ORTHO05D008852 5.4e-06 55.5 37 62.2


User provided reference genes

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