Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 7.4e-217 756.9 381 100.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.5e-116 423.7 340 66.5
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 9.7e-108 394.4 346 62.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.0e-100 370.2 339 59.0
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 2.6e-97 359.8 341 57.2
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 5.5e-95 352.1 341 58.7
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 3.6e-94 349.4 340 57.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 3.0e-93 346.3 345 56.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 3.0e-93 346.3 346 56.1
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 3.4e-92 342.8 353 56.1
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.7e-91 340.5 347 53.6
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.4e-90 336.7 343 54.2
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.7e-89 333.2 374 51.9
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 3.2e-87 326.2 340 53.5
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 5.5e-87 325.5 339 54.9
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 5.5e-87 325.5 351 53.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-86 323.9 344 54.4
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 4.7e-86 322.4 337 54.0
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.4e-85 320.9 345 54.8
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.2e-85 318.9 342 53.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 5.2e-85 318.9 348 53.4
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.3e-83 314.3 344 52.3
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.3e-83 314.3 352 52.8
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.8e-83 312.4 361 52.6
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 4.8e-83 312.4 376 50.5
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 7.0e-82 308.5 346 52.9
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 7.0e-82 308.5 341 56.0
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.6e-81 307.4 341 53.1
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.0e-80 304.7 342 51.8
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.0e-80 304.7 340 52.6
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.3e-80 304.3 339 52.8
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.7e-80 303.9 245 62.4
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 8.6e-80 301.6 281 58.7
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 8.6e-80 301.6 281 58.7
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.5e-79 300.8 268 59.7
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.5e-79 300.8 268 59.7
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.5e-79 300.8 281 58.4
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.9e-79 300.4 341 51.9
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.5e-79 300.1 341 51.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 5.5e-79 298.9 268 58.6
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 5.5e-79 298.9 341 51.6
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 9.5e-79 298.1 310 53.9
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 2.1e-78 297.0 291 56.0
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.1e-78 297.0 347 50.4
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.8e-78 296.6 310 53.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 3.6e-78 296.2 336 48.5
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.7e-78 295.8 232 63.8
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 8.0e-78 295.0 340 50.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 8.0e-78 295.0 209 70.8
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 8.0e-78 295.0 376 49.2
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.8e-77 293.9 310 53.5
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 5.2e-77 292.4 341 49.6
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 8.9e-77 291.6 348 50.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 3.4e-76 289.7 232 62.9
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.4e-76 289.3 347 50.7
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.2e-75 287.0 231 63.2
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.2e-75 287.0 321 51.7
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 2.8e-75 286.6 347 48.4
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.4e-74 283.5 322 53.4
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 3.2e-74 283.1 255 60.8
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 7.0e-74 282.0 367 46.6
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 9.2e-74 281.6 253 57.7
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 4.5e-73 279.3 274 56.6
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.0e-72 278.1 344 47.1
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.3e-72 277.7 231 61.9
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.7e-72 277.3 210 64.8
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.9e-72 276.6 300 52.3
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.9e-72 276.2 366 48.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.1e-70 270.4 311 50.5
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.7e-70 269.2 344 49.1
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.1e-70 268.9 356 48.0
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.0e-68 263.8 224 61.6
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.0e-68 263.8 354 47.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 2.6e-68 263.5 227 63.4
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.6e-68 263.5 227 63.4
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.6e-68 263.5 342 47.1
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.6e-68 263.5 342 47.4
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 7.5e-68 261.9 210 60.5
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 9.8e-68 261.5 231 60.6
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 1.7e-67 260.8 229 59.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 2.2e-67 260.4 186 68.8
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.4e-66 257.7 277 51.6
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.2e-66 256.5 319 44.5
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.0e-64 251.5 343 45.2
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 8.0e-62 241.9 207 62.8
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.1e-61 241.5 235 54.0
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.8e-61 240.7 200 62.0
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.3e-61 240.4 348 44.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.0e-61 239.6 344 43.9
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 4.4e-60 236.1 207 62.8
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-58 231.1 338 46.2
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.1e-58 229.6 302 45.4
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-57 228.0 269 47.2
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.3e-56 224.6 197 60.4
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.0e-56 223.4 341 42.5
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.2e-54 218.0 362 42.0
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.2e-54 218.0 208 58.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.6e-54 217.6 211 51.2
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.2e-51 207.2 206 55.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 6.4e-51 205.7 342 39.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.6e-49 201.1 193 53.9
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.1e-48 196.1 270 41.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.3e-47 193.4 273 43.2
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.6e-47 192.6 321 39.6
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 4.7e-46 189.5 202 51.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 4.4e-44 183.0 280 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 7.6e-44 182.2 196 49.5
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 2.9e-43 180.3 237 44.7
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.9e-42 177.6 289 41.5
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.9e-42 177.6 128 68.8
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 7.1e-42 175.6 352 37.8
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 9.3e-42 175.3 225 45.3
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.5e-41 173.3 253 41.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 6.0e-41 172.6 160 58.1
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.3e-40 171.4 196 49.0
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 1.3e-40 171.4 254 39.4
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 5.1e-40 169.5 317 37.2
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.5e-39 167.9 129 65.1
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.5e-39 167.2 123 67.5
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 9.6e-39 165.2 190 51.1
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-37 161.8 220 45.9
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 4.0e-37 159.8 145 60.7
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 5.3e-37 159.5 349 33.5
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.3e-35 154.8 196 47.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.2e-35 154.1 200 43.5
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.4e-34 151.4 308 36.0
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.1e-33 147.5 200 42.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 6.6e-32 142.5 121 65.3
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.7e-32 142.1 273 36.6
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 3.3e-31 140.2 260 35.4
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 4.3e-31 139.8 328 34.5
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 7.3e-31 139.0 221 43.0
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.6e-30 137.9 103 65.0
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 9.0e-29 132.1 334 34.4
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.4e-28 130.2 216 41.7
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 5.8e-28 129.4 92 71.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-26 125.2 113 57.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.2e-26 123.2 105 52.4
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.3e-23 113.2 74 70.3
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-21 108.6 75 69.3
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 2.9e-19 100.5 67 74.6
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 7.1e-18 95.9 104 43.3
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 4.8e-14 83.2 170 36.5
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 4.8e-14 83.2 73 60.3
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.1e-13 82.0 88 52.3
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 5.5e-10 69.7 69 50.7
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.3e-10 68.9 43 69.8
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 6.7e-08 62.8 150 31.3
MELO3C034996.2 Cucumis melo HOM05D004908 ORTHO05D006418 6.3e-06 56.2 37 70.3


User provided reference genes

Program Settings