Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.0e-163 580.1 305 100.0
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.4e-125 452.6 352 68.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.4e-125 452.6 352 68.5
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.4e-117 426.8 301 73.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.3e-115 420.2 362 63.3
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.9e-115 419.1 358 65.9
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.5e-114 416.0 304 74.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 5.6e-114 414.8 335 66.3
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 7.3e-114 414.5 356 64.3
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.6e-113 413.3 347 64.3
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.1e-113 412.9 351 63.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.8e-113 412.5 348 64.1
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-113 411.8 351 64.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-113 411.8 351 63.8
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 8.0e-113 411.0 361 62.0
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.0e-112 410.6 339 66.7
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.0e-112 409.1 359 62.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-112 409.1 349 63.6
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.6e-111 406.0 349 63.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 3.4e-111 405.6 351 63.0
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 4.4e-111 405.2 356 62.1
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 4.4e-111 405.2 353 62.9
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.3e-110 403.7 363 62.8
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.3e-110 403.7 344 62.8
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.2e-110 402.9 356 61.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.7e-110 402.1 348 62.1
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 8.3e-110 401.0 368 61.1
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 8.3e-110 401.0 349 63.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.4e-109 400.2 334 64.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.4e-109 400.2 353 62.6
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-109 400.2 350 62.9
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.8e-109 399.8 353 61.8
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-109 399.8 330 64.8
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-109 399.8 321 66.4
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.4e-109 399.4 357 59.7
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.0e-109 397.9 338 64.5
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.0e-109 397.9 338 64.5
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 9.2e-109 397.5 352 60.8
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 9.2e-109 397.5 357 59.9
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.2e-108 397.1 351 63.2
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-108 396.7 337 63.8
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-108 396.4 377 59.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 2.7e-108 396.0 360 61.4
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 3.5e-108 395.6 333 62.5
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.0e-107 394.0 364 61.0
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.0e-107 394.0 346 61.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.7e-107 393.3 350 61.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.3e-107 392.9 362 59.1
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 5.0e-107 391.7 330 63.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 5.0e-107 391.7 351 61.0
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 6.6e-107 391.3 351 61.0
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 8.6e-107 391.0 352 59.7
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.1e-106 390.6 358 61.5
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.1e-106 390.6 327 63.9
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.1e-106 390.6 355 61.4
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.9e-106 389.8 322 65.8
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.9e-106 389.8 350 60.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.5e-106 389.4 328 63.4
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 5.6e-106 388.3 350 60.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 5.6e-106 388.3 350 60.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 5.6e-106 388.3 350 60.6
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 5.6e-106 388.3 353 60.3
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 5.6e-106 388.3 363 57.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 5.6e-106 388.3 321 64.5
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 7.3e-106 387.9 353 60.3
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-105 387.1 353 60.3
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.2e-105 387.1 322 64.9
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.6e-105 386.7 354 59.3
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.6e-105 386.7 334 61.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.1e-105 386.3 381 60.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.8e-105 386.0 376 58.2
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.6e-105 385.6 360 59.4
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 3.6e-105 385.6 314 65.6
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 4.7e-105 385.2 336 63.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.7e-105 385.2 334 63.8
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 8.0e-105 384.4 347 59.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 8.0e-105 384.4 347 59.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 8.0e-105 384.4 347 59.7
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.4e-104 383.6 335 60.9
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.4e-104 383.6 325 64.3
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.8e-104 383.3 353 59.5
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-104 381.3 323 63.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.2e-103 380.6 322 64.0
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.2e-103 380.6 332 62.7
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.5e-103 380.2 347 59.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.0e-103 379.8 313 65.8
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 2.6e-103 379.4 349 60.5
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 4.4e-103 378.6 361 59.0
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 7.5e-103 377.9 355 59.2
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.5e-103 377.9 317 63.7
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.3e-102 377.1 329 61.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.1e-101 374.0 325 64.3
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.6e-100 370.2 321 62.9
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.5e-100 369.0 364 57.4
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.3e-99 367.1 354 60.2
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.7e-99 366.7 327 62.1
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.0e-99 365.9 353 58.9
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 5.0e-99 365.2 339 61.4
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 6.6e-99 364.8 292 67.5
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 3.3e-98 362.5 349 58.7
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 7.3e-98 361.3 324 60.8
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.8e-97 359.4 353 58.1
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.6e-97 359.0 336 61.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 7.5e-95 351.3 339 59.0
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 6.4e-94 348.2 306 59.8
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 8.3e-94 347.8 331 59.5
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.4e-93 346.3 348 55.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 6.0e-92 341.7 346 54.3
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 7.8e-92 341.3 315 60.0
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-91 340.9 309 60.8
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.3e-90 335.5 328 54.9
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.3e-90 335.5 313 58.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.7e-89 332.0 359 52.4
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 6.2e-89 331.6 320 59.1
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 8.9e-88 327.8 332 56.9
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.3e-86 323.9 295 61.4
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.7e-86 323.6 396 49.5
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 3.8e-86 322.4 331 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.9e-85 320.1 331 52.3
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 2.3e-83 313.2 273 63.0
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.9e-82 310.1 316 56.0
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 9.6e-82 307.8 300 58.0
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 8.4e-78 294.7 353 51.8
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.2e-76 290.8 353 48.2
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.2e-76 290.8 353 48.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 2.6e-71 273.1 296 54.4
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 9.9e-71 271.2 246 60.2
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 4.9e-70 268.9 175 78.9
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.9e-69 266.9 314 50.3
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.3e-67 260.8 307 51.5
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.9e-67 259.2 243 58.8
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.7e-65 252.7 209 65.6
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.8e-65 252.3 185 74.6
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-64 251.1 181 71.3
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.1e-56 223.0 167 70.7
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 6.9e-56 221.9 207 57.5
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 4.5e-55 219.2 229 54.6
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.9e-51 206.1 225 52.9
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-43 180.3 129 74.4
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.0e-43 179.9 128 73.4
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.8e-41 172.6 119 72.3
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.9e-40 168.7 127 67.7
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.7e-39 165.2 197 51.8
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.3e-33 145.6 131 63.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.4e-32 143.7 128 57.8
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-32 141.7 117 68.4
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-31 141.0 88 75.0
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 8.5e-30 135.2 127 61.4
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.6e-28 131.0 87 73.6
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-27 128.3 148 49.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.2e-22 110.5 88 67.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.2e-22 110.5 94 62.8
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-21 108.2 86 62.8
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 8.0e-20 102.1 79 73.4
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.0e-19 99.8 74 62.2
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-17 94.0 59 69.5
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-15 87.4 73 68.5
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 5.0e-14 82.8 52 67.3
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 6.3e-09 65.9 309 22.0


User provided reference genes

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