Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 4.8e-61 237.7 121 100.0
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.1e-52 208.4 123 86.2
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.9e-49 199.1 119 86.6
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.9e-49 199.1 125 82.4
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.5e-49 198.7 123 84.6
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.5e-49 198.7 117 85.5
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 4.2e-49 198.0 119 86.6
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 9.4e-49 196.8 119 86.6
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 9.4e-49 196.8 117 86.3
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.7e-48 195.3 117 85.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 4.7e-48 194.5 117 87.2
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 8.0e-48 193.7 121 84.3
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 8.0e-48 193.7 117 84.6
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 2.3e-47 192.2 116 82.8
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 3.0e-47 191.8 118 83.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 3.0e-47 191.8 120 83.3
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 3.0e-47 191.8 115 87.0
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.0e-47 191.8 121 78.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.2e-47 191.0 115 85.2
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 5.2e-47 191.0 118 82.2
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 5.2e-47 191.0 118 82.2
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 5.2e-47 191.0 118 82.2
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 5.2e-47 191.0 118 83.1
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 5.2e-47 191.0 118 83.1
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 8.8e-47 190.3 118 82.2
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 8.8e-47 190.3 120 81.7
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.5e-46 189.5 121 81.8
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.5e-46 189.5 121 81.8
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.5e-46 189.5 120 81.7
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.6e-46 188.7 121 80.2
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.7e-45 186.0 120 80.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.8e-45 185.3 121 78.5
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 6.3e-45 184.1 118 80.5
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 8.3e-45 183.7 115 81.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 8.3e-45 183.7 114 84.2
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.1e-44 183.3 116 81.9
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.1e-44 183.3 122 81.1
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.1e-44 183.3 118 78.8
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.4e-44 182.2 119 77.3
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.1e-44 181.8 134 74.6
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.1e-44 181.8 134 74.6
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.1e-44 181.8 118 77.1
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 7.0e-44 180.6 118 78.8
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.6e-43 179.5 113 81.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.6e-43 179.5 120 76.7
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.6e-43 179.5 126 77.0
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.0e-43 179.1 118 79.7
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 2.2e-42 175.6 144 67.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 2.2e-42 175.6 144 67.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.2e-42 175.6 116 78.4
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 2.9e-42 175.3 120 74.2
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.5e-42 174.1 114 78.1
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 8.5e-42 173.7 120 75.8
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-41 173.3 119 77.3
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.9e-41 172.6 121 74.4
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 3.2e-41 171.8 120 75.8
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 5.5e-41 171.0 120 75.8
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 7.2e-41 170.6 116 77.6
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 9.5e-41 170.2 120 74.2
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 9.5e-41 170.2 116 77.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 4.7e-40 167.9 116 76.7
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 6.1e-40 167.5 117 73.5
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.4e-39 166.4 121 72.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.3e-39 165.6 116 75.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.3e-39 165.6 132 68.2
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.0e-39 164.9 121 71.9
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 5.2e-39 164.5 120 68.3
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 6.8e-39 164.1 121 71.9
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 6.8e-39 164.1 121 72.7
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.2e-38 163.3 125 70.4
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.0e-38 162.5 117 72.6
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 3.4e-38 161.8 117 70.9
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.4e-38 161.4 117 71.8
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 7.5e-38 160.6 126 71.4
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 7.5e-38 160.6 116 72.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.7e-37 159.5 125 69.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.7e-37 159.5 133 68.4
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.7e-37 159.5 124 71.0
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 2.2e-37 159.1 113 75.2
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.1e-36 156.8 117 66.7
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.4e-36 156.4 113 74.3
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-36 156.0 121 71.9
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.8e-36 156.0 114 68.4
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 5.4e-36 154.5 120 71.7
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.4e-36 154.5 155 58.1
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 7.0e-36 154.1 107 72.0
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 3.5e-35 151.8 127 67.7
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 7.8e-35 150.6 90 80.0
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.3e-34 149.1 115 73.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 2.9e-34 148.7 119 71.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 8.6e-34 147.1 88 78.4
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.9e-33 146.0 115 72.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.9e-33 146.0 154 55.8
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 7.3e-33 144.1 175 50.3
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 7.3e-33 144.1 115 65.2
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 9.5e-33 143.7 134 61.9
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 9.5e-33 143.7 113 63.7
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.6e-32 142.9 116 64.7
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.8e-32 142.1 111 64.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.1e-32 141.0 85 80.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.1e-32 141.0 124 62.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.0e-31 138.7 110 71.8
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 3.0e-31 138.7 115 61.7
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 6.8e-31 137.5 114 61.4
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 6.8e-31 137.5 112 60.7
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 9.8e-30 133.7 114 60.5
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.2e-29 132.5 114 64.9
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.2e-29 132.5 114 60.5
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.9e-29 132.1 106 60.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 6.4e-29 131.0 84 76.2
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-28 130.2 100 69.0
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.8e-28 129.4 70 90.0
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 5.4e-28 127.9 119 61.3
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.6e-27 126.3 125 53.6
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.0e-27 125.9 105 60.0
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 4.6e-27 124.8 115 59.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 2.3e-26 122.5 69 85.5
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 6.6e-26 120.9 121 59.5
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.9e-25 119.4 111 63.1
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.9e-25 119.4 111 63.1
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.1e-24 115.9 175 43.4
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.1e-24 115.9 70 75.7
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.3e-21 106.7 92 60.9
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 5.0e-18 94.7 82 62.2
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-14 82.8 79 60.8
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.7e-13 79.7 48 79.2
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.7e-13 79.7 60 66.7
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 5.4e-12 74.7 98 40.8
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 4.6e-11 71.6 49 69.4
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.8e-07 59.7 63 55.6
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 8.9e-07 57.4 39 64.1


User provided reference genes

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