Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 4.0e-48 194.5 104 100.0
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 1.9e-34 149.1 104 76.0
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 1.3e-17 93.2 112 53.6
TAR629G1767 Trochodendron aralioides HOM05D007413 ORTHO05D009357 4.8e-17 91.3 107 51.4
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 1.1e-13 80.1 100 51.0
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 2.1e-12 75.9 115 47.0
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 2.1e-12 75.9 108 47.2
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 6.1e-12 74.3 69 50.7
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 6.1e-12 74.3 91 51.6
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 6.1e-12 74.3 104 44.2
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 1.0e-11 73.6 114 43.0
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.8e-11 72.8 105 42.9
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.8e-11 72.8 105 42.9
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 1.8e-11 72.8 104 44.2
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 2.3e-11 72.4 85 47.1
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 3.0e-11 72.0 85 49.4
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 3.0e-11 72.0 55 58.2
CDE10G0699 Ceratophyllum demersum HOM05D007413 ORTHO05D009357 3.9e-11 71.6 94 41.5
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 6.7e-11 70.9 111 45.0
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 6.7e-11 70.9 91 47.3
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 1.1e-10 70.1 98 42.9
PGSC0003DMG400025144 Solanum tuberosum HOM05D007413 ORTHO05D009357 2.5e-10 68.9 95 47.4
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 3.3e-10 68.6 94 44.7
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 3.3e-10 68.6 105 41.0
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 5.7e-10 67.8 110 46.4
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 5.7e-10 67.8 94 46.8
CDE10G0216 Ceratophyllum demersum HOM05D001577 ORTHO05D008017 1.3e-09 66.6 98 39.8
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 2.2e-09 65.9 107 40.2
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 2.2e-09 65.9 95 45.3
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 2.8e-09 65.5 71 43.7
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 3.7e-09 65.1 92 43.5
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 3.7e-09 65.1 54 61.1
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 3.7e-09 65.1 94 42.6
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 4.8e-09 64.7 104 43.3
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 4.8e-09 64.7 82 43.9
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 4.8e-09 64.7 97 45.4
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 4.8e-09 64.7 95 46.3
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 4.8e-09 64.7 95 45.3
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 6.3e-09 64.3 114 41.2
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.3e-09 64.3 114 41.2
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.3e-09 64.3 114 41.2
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 6.3e-09 64.3 107 41.1
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 1.1e-08 63.5 107 45.8
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 1.1e-08 63.5 102 42.2
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 1.4e-08 63.2 49 63.3
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 2.4e-08 62.4 114 39.5
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 2.4e-08 62.4 100 43.0
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 2.4e-08 62.4 57 57.9
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 3.1e-08 62.0 114 39.5
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 4.1e-08 61.6 98 40.8
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 5.3e-08 61.2 100 43.0
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 5.3e-08 61.2 81 44.4
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 5.3e-08 61.2 100 45.0
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 9.1e-08 60.5 106 42.5
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 9.1e-08 60.5 50 58.0
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 1.2e-07 60.1 102 41.2
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 1.5e-07 59.7 98 41.8
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 1.5e-07 59.7 55 47.3
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 2.0e-07 59.3 96 37.5
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 2.0e-07 59.3 63 52.4
THA.LOC104825781 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 2.6e-07 58.9 97 44.3
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 4.5e-07 58.2 93 45.2
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 4.5e-07 58.2 84 45.2
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 7.7e-07 57.4 96 41.7
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 7.7e-07 57.4 90 40.0
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 7.7e-07 57.4 59 49.2
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 7.7e-07 57.4 104 40.4
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 1.0e-06 57.0 104 42.3
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 1.3e-06 56.6 105 41.0
THA.LOC109116393 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 1.7e-06 56.2 99 40.4
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 3.8e-06 55.1 98 37.8
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 5.0e-06 54.7 63 50.8
DCAR_011043 Daucus carota HOM05D007413 ORTHO05D009357 5.0e-06 54.7 51 52.9
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 5.0e-06 54.7 112 37.5
SGA_v2.0_scaffold52G19169 Striga asiatica HOM05D007413 ORTHO05D009357 5.0e-06 54.7 65 41.5
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 6.5e-06 54.3 108 38.9
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 6.5e-06 54.3 96 40.6
Sc14g0006230 Simmondsia chinensis HOM05D007413 ORTHO05D009357 6.5e-06 54.3 59 49.2
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 8.5e-06 53.9 49 55.1
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 8.5e-06 53.9 96 38.5


User provided reference genes

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