Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.3e-42 175.3 94 100.0
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.8e-37 157.9 94 86.2
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.3e-36 153.3 94 88.3
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.9e-33 145.6 94 80.9
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 7.4e-33 143.7 94 77.7
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.3e-32 142.9 91 79.1
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 8.1e-32 140.2 92 72.8
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.1e-31 139.8 94 76.6
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.0e-31 137.9 88 77.3
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 6.9e-31 137.1 89 75.3
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 6.9e-31 137.1 90 76.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 9.0e-31 136.7 85 77.6
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 9.0e-31 136.7 85 77.6
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 9.0e-31 136.7 85 77.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.2e-30 136.3 92 70.7
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.5e-30 136.0 85 78.8
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.0e-30 135.6 86 76.7
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.0e-30 135.6 85 77.6
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 2.6e-30 135.2 88 78.4
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 3.4e-30 134.8 86 76.7
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.4e-30 134.8 88 76.1
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.5e-30 134.4 85 76.5
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 5.8e-30 134.0 85 77.6
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 9.9e-30 133.3 87 72.4
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.2e-29 132.1 88 73.9
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.2e-29 132.1 89 71.9
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.9e-29 131.7 86 75.6
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.9e-29 131.7 89 71.9
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 3.8e-29 131.3 88 75.0
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 3.8e-29 131.3 90 73.3
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 4.9e-29 131.0 89 71.9
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 6.4e-29 130.6 88 72.7
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 6.4e-29 130.6 89 70.8
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 8.4e-29 130.2 88 75.0
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.1e-28 129.8 86 70.9
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.1e-28 129.8 91 73.6
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.1e-28 129.8 88 73.9
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.1e-28 129.8 85 74.1
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.4e-28 129.4 90 71.1
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-28 129.4 89 71.9
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.4e-28 129.4 90 71.1
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.5e-28 128.6 90 73.3
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 2.5e-28 128.6 90 71.1
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 4.2e-28 127.9 89 70.8
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 5.5e-28 127.5 86 72.1
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 7.1e-28 127.1 85 72.9
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 7.1e-28 127.1 87 67.8
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 7.1e-28 127.1 87 70.1
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 7.1e-28 127.1 85 74.1
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 9.3e-28 126.7 90 68.9
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 9.3e-28 126.7 89 69.7
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.2e-27 126.3 90 70.0
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.2e-27 126.3 84 71.4
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.6e-27 125.9 87 69.0
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 3.5e-27 124.8 91 65.9
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 3.5e-27 124.8 85 69.4
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 4.6e-27 124.4 87 72.4
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 4.6e-27 124.4 83 74.7
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 4.6e-27 124.4 87 71.3
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 4.6e-27 124.4 88 71.6
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 4.6e-27 124.4 87 66.7
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 6.0e-27 124.0 86 69.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 6.0e-27 124.0 91 67.0
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.0e-27 124.0 84 71.4
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 6.0e-27 124.0 84 69.0
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.0e-26 123.2 89 69.7
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 87 67.8
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.8e-26 122.5 92 67.4
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.0e-26 121.7 92 63.0
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.1e-26 120.9 87 69.0
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 5.1e-26 120.9 87 70.1
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 8.7e-26 120.2 86 70.9
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.1e-25 119.8 87 66.7
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-25 119.8 87 66.7
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 91 62.6
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 1.5e-25 119.4 88 67.0
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.9e-25 119.0 94 69.1
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.9e-25 119.0 81 70.4
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 3.3e-25 118.2 78 74.4
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 3.3e-25 118.2 90 64.4
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 5.6e-25 117.5 85 69.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 7.4e-25 117.1 88 62.5
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 9.6e-25 116.7 76 75.0
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.3e-24 116.3 93 59.1
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.1e-24 115.5 91 62.6
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 2.1e-24 115.5 92 62.0
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.8e-24 115.2 90 63.3
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.8e-24 115.2 90 63.3
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 3.7e-24 114.8 82 64.6
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 3.7e-24 114.8 85 70.6
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 6.2e-24 114.0 80 73.8
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 6.2e-24 114.0 89 66.3
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 5.3e-23 110.9 76 73.7
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 7.6e-22 107.1 82 65.9
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.3e-21 106.3 68 77.9
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 8.4e-21 103.6 69 71.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 2.5e-20 102.1 69 71.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.3e-20 100.1 69 71.0
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.2e-19 99.8 89 51.7
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.6e-19 99.4 83 56.6
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-19 99.0 82 56.1
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.1e-19 99.0 82 56.1
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.1e-19 99.0 83 56.6
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 2.7e-19 98.6 83 56.6
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.5e-19 98.2 86 50.0
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 7.9e-19 97.1 61 80.3
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 1.0e-18 96.7 87 52.9
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.3e-18 96.3 83 54.2
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.3e-18 96.3 81 59.3
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.8e-18 95.9 83 55.4
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 3.9e-18 94.7 83 54.2
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 6.7e-18 94.0 83 51.8
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 51.8
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 51.8
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 1.5e-17 92.8 82 52.4
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.9e-17 92.4 80 57.5
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-17 92.4 82 52.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-17 92.0 83 50.6
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 3.3e-17 91.7 82 51.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 3.3e-17 91.7 82 51.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 7.4e-17 90.5 82 51.2
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 7.4e-17 90.5 82 51.2
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.4e-17 90.5 95 50.5
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 7.4e-17 90.5 76 56.6
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-16 89.7 82 51.2
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-16 89.4 82 51.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 2.2e-16 89.0 82 51.2
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.2e-16 89.0 83 49.4
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-16 88.6 82 51.2
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 2.8e-16 88.6 82 50.0
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 4.8e-16 87.8 85 51.8
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 8.2e-16 87.0 82 50.0
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 8.2e-16 87.0 82 50.0
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 8.2e-16 87.0 82 50.0
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 8.2e-16 87.0 87 48.3
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 4.5e-14 81.3 73 52.1
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 4.5e-14 81.3 73 52.1
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.5e-14 81.3 59 69.5
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 5.9e-14 80.9 73 52.1
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.0e-13 80.1 81 53.1
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.3e-13 79.7 73 50.7
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 1.1e-12 76.6 86 50.0
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 2.5e-12 75.5 81 44.4
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.0e-10 70.1 65 50.8
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.8e-10 69.3 59 62.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 2.3e-10 68.9 83 49.4
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-08 61.6 82 43.9
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 6.3e-08 60.8 69 44.9
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 8.2e-08 60.5 83 38.6
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 5.3e-07 57.8 36 83.3
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 2.6e-06 55.5 34 79.4


User provided reference genes

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