Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.1e-74 283.5 327 100.0
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.0e-65 254.6 327 93.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 3.1e-62 243.0 325 89.5
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.4e-60 235.0 327 91.7
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 5.5e-59 232.3 327 90.8
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.1e-59 231.9 327 89.9
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.6e-58 230.7 327 90.2
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.6e-58 230.7 327 91.1
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.7e-58 229.9 327 89.9
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.5e-58 229.6 325 91.7
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 6.1e-58 228.8 327 88.4
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.0e-57 228.0 325 91.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.0e-57 228.0 325 91.7
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.3e-57 227.6 328 90.9
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.8e-57 227.3 325 91.7
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.8e-57 227.3 325 91.7
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.3e-57 226.9 327 89.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.0e-57 226.5 322 91.3
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 3.0e-57 226.5 323 92.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.7e-57 224.9 323 92.0
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.1e-56 224.6 322 90.4
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-56 224.6 323 91.6
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.5e-56 224.2 325 91.4
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.9e-56 223.8 322 91.6
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 3.3e-56 223.0 324 90.7
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.3e-56 223.0 322 91.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.4e-56 221.9 329 89.7
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 7.4e-56 221.9 322 90.7
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 7.4e-56 221.9 323 88.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.3e-55 221.1 327 89.0
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.3e-55 221.1 322 88.8
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.6e-55 220.7 327 88.7
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.6e-55 220.7 313 92.7
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-55 220.3 319 89.0
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.8e-55 219.9 327 89.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.7e-55 219.5 321 90.3
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.7e-55 219.5 319 90.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 3.7e-55 219.5 325 90.5
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 8.2e-55 218.4 327 88.4
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 8.2e-55 218.4 327 88.7
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 318 90.9
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.1e-54 218.0 327 88.4
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.8e-54 217.2 327 88.1
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.8e-54 217.2 322 89.8
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.8e-54 217.2 323 90.1
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.4e-54 216.9 324 89.5
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.4e-54 216.9 329 88.8
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.4e-54 216.9 328 89.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.1e-54 216.5 327 88.1
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.1e-54 216.5 327 88.1
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.1e-54 216.1 321 89.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 4.1e-54 216.1 321 90.7
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.1e-54 216.1 325 89.2
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 5.3e-54 215.7 322 90.1
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.9e-54 215.3 327 87.8
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 6.9e-54 215.3 325 88.9
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 6.9e-54 215.3 330 79.4
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.9e-54 215.3 325 87.1
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 6.9e-54 215.3 318 89.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 9.0e-54 214.9 324 89.8
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.2e-53 214.5 321 89.4
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.5e-53 214.2 327 87.8
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.6e-53 213.4 309 92.2
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.6e-53 213.4 309 92.2
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.6e-53 213.4 321 90.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.6e-53 213.4 323 86.7
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 3.4e-53 213.0 322 90.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 3.4e-53 213.0 322 87.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.9e-53 212.2 320 88.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.9e-53 212.2 326 89.0
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.9e-53 212.2 326 89.0
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 5.9e-53 212.2 325 88.9
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.0e-52 211.5 325 88.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 89.1
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.7e-52 210.7 331 87.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 327 86.9
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.2e-52 210.3 322 89.1
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.9e-52 209.9 328 85.7
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 3.8e-52 209.5 325 88.6
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.8e-52 209.5 328 86.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 3.8e-52 209.5 324 88.9
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.0e-52 209.1 328 86.3
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.5e-52 208.8 320 89.7
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 8.5e-52 208.4 336 74.7
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.1e-51 208.0 328 86.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.4e-51 207.6 325 89.8
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-51 207.6 297 94.6
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.9e-51 207.2 324 88.9
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 319 88.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.5e-51 206.8 319 87.8
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.5e-51 206.8 347 61.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 3.2e-51 206.5 324 88.3
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.2e-51 206.1 343 71.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.2e-51 206.1 324 89.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.5e-51 205.7 324 74.1
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.5e-51 205.7 319 87.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 7.2e-51 205.3 319 88.4
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 7.2e-51 205.3 319 89.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 7.2e-51 205.3 324 88.6
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.1e-50 203.8 324 88.3
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.7e-50 203.4 329 78.7
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 3.6e-50 203.0 322 87.6
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 7.9e-50 201.8 323 87.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.9e-50 201.8 350 62.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.0e-49 201.4 364 66.2
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.4e-49 201.1 320 87.5
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.1e-49 199.1 319 86.8
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 4.3e-48 196.1 338 71.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 9.7e-48 194.9 245 85.3
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.3e-47 194.5 323 87.9
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.3e-47 194.5 323 84.8
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 6.3e-47 192.2 321 85.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.1e-46 191.4 245 88.6
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 344 83.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 344 76.7
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.1e-46 189.9 313 88.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 3.1e-46 189.9 296 89.9
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 4.1e-46 189.5 249 86.3
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.3e-46 189.1 321 84.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.3e-46 189.1 321 84.7
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.9e-46 188.7 329 79.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.9e-46 188.7 329 79.0
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 3.4e-45 186.4 324 84.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.5e-45 186.0 332 75.9
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.5e-45 186.0 327 82.9
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.0e-44 184.9 326 85.3
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 5.0e-44 182.6 327 83.2
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.2e-43 179.9 327 52.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 4.2e-43 179.5 101 82.2
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.4e-43 178.3 329 68.7
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-42 177.9 341 74.2
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.1e-42 177.2 325 83.4
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.7e-42 176.8 322 85.4
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.7e-42 176.8 344 79.1
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.4e-41 174.5 100 81.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.4e-41 174.5 100 81.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.7e-41 172.2 324 84.9
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.1e-40 171.4 315 82.2
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.5e-40 171.0 318 81.4
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.3e-40 169.9 98 82.7
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.3e-40 169.9 240 67.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.3e-39 167.9 315 82.2
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.3e-39 167.9 315 83.8
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.7e-39 167.5 96 80.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.7e-39 167.5 96 80.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.8e-39 166.8 97 82.5
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 8.2e-39 165.2 95 80.0
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.4e-38 164.5 326 69.6
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.4e-38 163.7 100 77.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.4e-38 163.7 100 76.0
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.1e-38 163.3 222 91.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 7.0e-38 162.2 105 75.2
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.7e-36 157.5 93 80.6
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.2e-36 157.1 318 81.4
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 5.7e-32 142.5 248 76.2
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.0e-29 134.0 73 82.2
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.7e-28 131.0 94 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.5e-27 127.9 324 75.9
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.5e-27 127.9 304 78.0
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 6.1e-26 122.5 77 76.6
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.4e-24 116.7 276 79.0
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.5e-20 102.1 65 73.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.6e-18 96.7 73 63.0
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 8.0e-18 95.5 50 82.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.0e-17 93.2 88 52.3
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.0e-16 90.9 118 87.3
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.6e-16 90.5 64 62.5
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 4.4e-16 89.7 245 71.8
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.7e-16 89.4 118 55.1
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.8e-15 87.0 65 61.5
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.3e-15 85.9 258 86.0
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-12 77.8 39 82.1
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 5.0e-12 76.3 48 77.1
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.6e-11 72.8 41 82.9
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 4.7e-10 69.7 41 80.5
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.3e-09 67.4 93 45.2
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 4.0e-09 66.6 41 78.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.0e-08 64.3 93 43.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 7.5e-08 62.4 42 71.4
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.1e-06 58.5 40 67.5


User provided reference genes

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