Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 6.0e-94 347.4 169 100.0
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 2.6e-73 278.9 155 81.9
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 2.2e-72 275.8 155 83.2
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 5.5e-71 271.2 160 78.1
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 2.7e-70 268.9 154 78.6
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 2.7e-70 268.9 168 76.2
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.0e-69 266.9 156 78.2
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.8e-69 266.2 162 76.5
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 1.8e-69 266.2 167 75.4
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 3.0e-69 265.4 156 77.6
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 3.0e-69 265.4 156 77.6
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 3.9e-69 265.0 153 79.1
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 3.9e-69 265.0 163 73.6
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.9e-69 265.0 162 75.9
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.5e-68 263.1 153 77.8
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 2.0e-68 262.7 156 76.3
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 4.4e-68 261.5 154 76.6
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 4.4e-68 261.5 161 76.4
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 7.4e-68 260.8 161 75.8
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 7.4e-68 260.8 161 75.8
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 7.4e-68 260.8 153 77.1
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 7.4e-68 260.8 151 78.8
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 9.7e-68 260.4 160 75.6
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 9.7e-68 260.4 163 74.2
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.3e-67 260.0 154 77.9
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.3e-67 260.0 162 74.7
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 1.7e-67 259.6 161 74.5
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 2.2e-67 259.2 166 71.7
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 2.2e-67 259.2 154 76.6
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 4.8e-67 258.1 154 76.6
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 4.8e-67 258.1 154 76.6
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 4.8e-67 258.1 154 76.6
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 4.8e-67 258.1 154 76.6
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 6.3e-67 257.7 162 73.5
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 6.3e-67 257.7 158 72.2
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 8.2e-67 257.3 158 75.3
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.1e-66 256.9 155 76.8
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.4e-66 256.5 162 72.8
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 2.4e-66 255.8 153 77.1
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 2.4e-66 255.8 153 75.8
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 3.1e-66 255.4 151 77.5
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 3.1e-66 255.4 155 74.8
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 9.1e-66 253.8 160 71.2
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 9.1e-66 253.8 159 73.0
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.2e-65 253.4 170 71.8
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.6e-65 252.3 198 63.6
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 3.5e-65 251.9 170 71.8
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 3.5e-65 251.9 160 71.2
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.5e-65 251.5 167 70.1
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.5e-65 251.5 161 71.4
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 4.5e-65 251.5 162 66.7
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 5.9e-65 251.1 153 75.8
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 7.7e-65 250.8 165 70.9
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.0e-64 250.4 153 72.5
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.0e-64 250.4 164 68.9
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.0e-64 250.4 156 75.0
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 2.2e-64 249.2 152 73.0
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.2e-64 249.2 162 69.8
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 5.0e-64 248.1 158 74.1
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 8.5e-64 247.3 154 74.7
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 8.5e-64 247.3 153 71.9
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 1.1e-63 246.9 156 72.4
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.4e-63 246.5 153 75.8
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.4e-63 246.5 158 70.3
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.4e-63 246.5 161 70.2
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 1.9e-63 246.1 158 68.4
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 2.5e-63 245.7 157 72.0
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 2.5e-63 245.7 162 66.7
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.5e-63 245.7 159 69.2
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 3.2e-63 245.4 154 72.1
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 4.2e-63 245.0 153 71.2
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.2e-63 245.0 165 68.5
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.2e-63 245.0 155 71.6
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 5.5e-63 244.6 155 71.0
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 5.5e-63 244.6 155 71.0
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 9.4e-63 243.8 177 66.7
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 9.4e-63 243.8 159 69.2
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.2e-62 243.4 164 69.5
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.6e-62 243.0 157 73.2
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.6e-62 243.0 155 71.6
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 2.1e-62 242.7 156 72.4
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 2.7e-62 242.3 149 73.8
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 4.7e-62 241.5 150 70.0
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.3e-61 239.2 155 68.4
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.0e-60 236.1 153 71.2
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 2.0e-60 236.1 138 78.3
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 3.6e-54 215.3 158 63.3
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.4e-53 213.4 171 63.7
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 7.5e-52 207.6 149 67.1
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.3e-51 206.8 120 76.7
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 3.1e-50 202.2 120 75.8
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 2.7e-49 199.1 132 70.5
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 2.7e-49 199.1 127 70.9
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 7.7e-49 197.6 175 59.4
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 3.8e-48 195.3 123 73.2
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 3.8e-48 195.3 149 59.7
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 4.2e-47 191.8 168 58.3
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 2.6e-44 182.6 157 54.8
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 7.7e-41 171.0 152 55.9
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 2.9e-40 169.1 153 57.5
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 3.8e-40 168.7 153 58.2
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 6.8e-37 157.9 97 74.2
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 8.3e-35 151.0 107 63.6
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.5e-31 139.4 76 78.9
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 2.8e-30 136.0 114 60.5
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 6.1e-30 134.8 88 72.7
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.6e-22 110.2 58 82.8
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 6.8e-13 78.2 50 72.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 4.1e-10 68.9 48 64.6
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.7e-09 66.2 34 85.3
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 7.8e-09 64.7 35 77.1
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.1e-07 60.8 63 50.8
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 2.5e-07 59.7 40 67.5
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 2.5e-07 59.7 43 62.8
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 4.3e-07 58.9 51 56.9


User provided reference genes

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