Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23344 Nelumbo nucifera HOM05D003021 ORTHO05D002235 1.3e-166 590.1 415 100.0
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 2.2e-49 200.7 398 40.7
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 9.4e-40 168.7 349 38.7
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.6e-34 151.4 398 36.4
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 5.0e-33 146.4 417 33.3
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 9.5e-32 142.1 136 56.6
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.0e-30 138.7 366 34.4
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 5.4e-27 126.3 441 31.5
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 7.3e-24 115.9 403 37.2
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 2.1e-23 114.4 441 39.2
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 4.7e-23 113.2 367 31.1
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.9e-20 104.0 307 28.7
GSVIVG01011491001 Vitis vinifera HOM05D003021 ORTHO05D002235 6.4e-20 102.8 322 40.1
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.5e-18 97.1 429 28.9
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 1.0e-17 95.5 393 35.4
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 3.9e-17 93.6 432 40.7
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 5.0e-17 93.2 358 28.2
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 2.5e-16 90.9 428 33.2
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 3.3e-16 90.5 400 35.8
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 9.5e-16 89.0 102 52.0
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 1.1e-14 85.5 111 41.4
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 5.2e-14 83.2 120 39.2
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 1.5e-13 81.6 421 29.5
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.5e-13 81.6 384 26.8
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 1.5e-13 81.6 120 40.0
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 2.0e-13 81.3 373 47.7
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 2.0e-13 81.3 125 42.4
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.6e-13 80.9 431 29.9
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 7.5e-13 79.3 353 28.0
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 7.5e-13 79.3 373 47.5
Glyma.19G027500 Glycine max HOM05D003021 ORTHO05D002235 1.3e-12 78.6 438 36.3
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.7e-12 78.2 385 27.0
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 2.9e-12 77.4 339 28.0
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 8.3e-12 75.9 425 28.5
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.1e-11 75.5 143 34.3
CSS0036404 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.4e-11 75.1 410 26.6
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 1.4e-11 75.1 439 34.4
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 1.9e-11 74.7 353 28.3
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 3.2e-11 73.9 96 43.8
ATR0111G037 Amborella trichopoda HOM05D003021 ORTHO05D002235 4.1e-11 73.6 114 38.6
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 4.1e-11 73.6 95 41.1
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 4.1e-11 73.6 350 32.3
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 1.2e-10 72.0 399 41.6
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 1.2e-10 72.0 123 39.8
Rhsim12G0153000 Rhododendron simsii HOM05D003021 ORTHO05D002235 1.6e-10 71.6 134 37.3
Glyma.08G241800 Glycine max HOM05D003021 ORTHO05D002235 3.5e-10 70.5 136 37.5
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 6.0e-10 69.7 307 35.5
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 7.8e-10 69.3 120 37.5
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 7.8e-10 69.3 93 40.9
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 1.0e-09 68.9 97 42.3
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.3e-09 68.6 400 31.0
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 1.7e-09 68.2 425 30.6
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 2.3e-09 67.8 61 50.8
CAN.G206.199 Capsicum annuum HOM05D003021 ORTHO05D002235 2.3e-09 67.8 61 50.8
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 2.3e-09 67.8 102 38.2
CAN.G1627.5 Capsicum annuum HOM05D009846 ORTHO05D000368 3.9e-09 67.0 61 50.8
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 3.9e-09 67.0 137 34.3
Solyc02g088580.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 5.0e-09 66.6 90 43.3
Hma1.2p1_0221F.1_g093100 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 6.6e-09 66.2 114 38.6
Sed0023229 Sechium edule HOM05D003021 ORTHO05D002235 6.6e-09 66.2 123 35.8
Sopen02g033310 Solanum pennellii HOM05D003021 ORTHO05D002235 6.6e-09 66.2 90 43.3
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 6.6e-09 66.2 90 43.3
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 8.6e-09 65.9 149 36.9
TPR.G26173 Trifolium pratense HOM05D003021 ORTHO05D002235 8.6e-09 65.9 103 40.8
CAN.G638.54 Capsicum annuum HOM05D009846 ORTHO05D000368 1.1e-08 65.5 60 50.0
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 1.5e-08 65.1 409 36.7
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 1.9e-08 64.7 70 47.1
CAN.G289.54 Capsicum annuum HOM05D003021 ORTHO05D002235 2.5e-08 64.3 61 50.8
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 2.5e-08 64.3 388 27.6
Rhsim09G0002000 Rhododendron simsii HOM05D001654 ORTHO05D002235 2.5e-08 64.3 307 25.4
CANSAT80G0381 Cannabis sativa HOM05D003021 ORTHO05D002235 3.3e-08 63.9 123 34.1
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 3.3e-08 63.9 134 34.3
CAN.G1236.12 Capsicum annuum HOM05D009846 ORTHO05D002235 4.3e-08 63.5 50 60.0
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 4.3e-08 63.5 120 35.8
PSO478G1157 Papaver somniferum HOM05D003021 ORTHO05D002235 4.3e-08 63.5 326 28.5
CAN.G411.98 Capsicum annuum HOM05D009846 ORTHO05D002235 7.3e-08 62.8 48 58.3
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 7.3e-08 62.8 403 39.0
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 7.3e-08 62.8 82 45.1
QL10p018571 Quercus lobata HOM05D003021 ORTHO05D002235 7.3e-08 62.8 399 25.6
Rhsim09G0190600 Rhododendron simsii HOM05D001654 ORTHO05D002235 7.3e-08 62.8 150 37.3
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 7.3e-08 62.8 353 22.7
CAN.G411.100 Capsicum annuum HOM05D009846 ORTHO05D000368 1.2e-07 62.0 61 47.5
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 1.2e-07 62.0 143 38.5
Glyma.18G264100 Glycine max HOM05D003021 ORTHO05D002235 1.6e-07 61.6 133 34.6
PSO017G1133 Papaver somniferum HOM05D003021 ORTHO05D002235 2.1e-07 61.2 405 26.7
AL6G26280 Arabidopsis lyrata HOM05D009950 ORTHO05D002235 2.8e-07 60.8 106 41.5
AT5G15430 Arabidopsis thaliana HOM05D009950 ORTHO05D002235 2.8e-07 60.8 104 39.4
CAN.G411.103 Capsicum annuum HOM05D009846 ORTHO05D000368 2.8e-07 60.8 62 45.2
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 2.8e-07 60.8 351 25.9
THA.LOC104823896 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 2.8e-07 60.8 351 25.9
Actinidia04851 Actinidia chinensis HOM05D002141 ORTHO05D002119 3.6e-07 60.5 130 33.8
CAN.G1627.1 Capsicum annuum HOM05D009846 ORTHO05D002235 3.6e-07 60.5 58 48.3
SGA_v2.0_scaffold52G19187 Striga asiatica HOM05D003021 ORTHO05D002235 4.7e-07 60.1 137 32.8
Carub.0006s1359 Capsella rubella HOM05D009950 ORTHO05D002235 6.2e-07 59.7 95 40.0
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 8.1e-07 59.3 463 28.3
Sc10g0003280 Simmondsia chinensis HOM05D003021 ORTHO05D002235 8.1e-07 59.3 114 33.3
Actinidia09241 Actinidia chinensis HOM05D003021 ORTHO05D002235 1.1e-06 58.9 118 33.1
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 125 32.8
CSS0039196 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.8e-06 58.2 132 33.3
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 1.8e-06 58.2 351 29.3
Psat3g200600 Pisum sativum HOM05D003021 ORTHO05D002235 1.8e-06 58.2 48 54.2
Rhsim06G0013300 Rhododendron simsii HOM05D003021 ORTHO05D002235 1.8e-06 58.2 49 55.1
Atru.chr9.291 Acer truncatum HOM05D003021 ORTHO05D002235 4.0e-06 57.0 131 32.1
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 4.0e-06 57.0 113 32.7
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 4.0e-06 57.0 82 46.3
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 4.0e-06 57.0 421 41.8
Oeu000639.1 Olea europaea HOM05D003021 ORTHO05D002235 5.2e-06 56.6 99 42.4
Potri.015G049600 Populus trichocarpa HOM05D003021 ORTHO05D002235 5.2e-06 56.6 66 42.4
Sp6g28670 Schrenkiella parvula HOM05D009950 ORTHO05D002235 5.2e-06 56.6 75 46.7
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 6.8e-06 56.2 431 35.7
THA.LOC104802964 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 6.8e-06 56.2 85 43.5
Aa31LG9G16610 Aethionema arabicum HOM05D003021 ORTHO05D002235 8.9e-06 55.8 140 34.3
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 8.9e-06 55.8 489 33.3
Psat3g200560 Pisum sativum HOM05D003021 ORTHO05D002235 8.9e-06 55.8 95 38.9


User provided reference genes

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