Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 8.1e-54 213.8 132 100.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.0e-32 143.7 145 57.2
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.3e-32 143.3 146 61.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.3e-31 138.7 128 57.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.3e-31 138.7 144 61.8
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 5.7e-31 137.9 139 65.5
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 9.7e-31 137.1 131 67.2
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.7e-30 136.3 144 55.6
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 2.8e-30 135.6 141 68.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 6.3e-30 134.4 141 68.8
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.2e-28 130.2 134 59.7
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.7e-27 126.3 125 56.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.7e-27 126.3 142 57.0
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.2e-27 125.9 128 65.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.1e-26 123.6 136 58.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.4e-26 123.2 134 50.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 4.2e-26 121.7 113 59.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 5.5e-26 121.3 129 50.4
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 7.2e-26 120.9 128 50.8
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 9.4e-26 120.6 131 59.5
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.4e-24 116.7 131 68.7
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.4e-24 116.7 131 68.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.8e-24 116.3 149 53.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.3e-24 115.9 134 67.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.3e-24 115.9 123 66.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.3e-24 115.9 120 53.3
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.7e-24 114.4 120 52.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 6.7e-24 114.4 129 48.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 8.8e-24 114.0 116 63.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.1e-23 113.6 122 53.3
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.5e-23 113.2 120 55.0
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.5e-23 113.2 116 54.3
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.0e-23 112.8 150 49.3
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 2.6e-23 112.5 125 56.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.6e-23 112.5 130 57.7
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 3.3e-23 112.1 132 50.0
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 7.4e-23 110.9 138 64.5
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 9.7e-23 110.5 128 49.2
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.7e-22 109.8 135 60.7
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 6.3e-22 107.8 122 58.2
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-21 107.1 130 61.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.8e-21 106.3 120 50.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.4e-21 105.9 125 60.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.1e-21 105.5 139 46.8
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.1e-21 105.1 139 52.5
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.1e-21 105.1 129 51.9
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.1e-21 105.1 129 51.9
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.1e-21 105.1 129 51.9
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 4.1e-21 105.1 129 52.7
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.1e-21 105.1 128 50.8
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 5.3e-21 104.8 132 55.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 5.3e-21 104.8 132 55.3
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 5.3e-21 104.8 132 55.3
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 9.1e-21 104.0 129 47.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 9.1e-21 104.0 140 52.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.5e-20 103.2 121 57.9
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 2.0e-20 102.8 126 48.4
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.6e-20 102.4 129 51.9
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.6e-20 102.4 141 56.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.6e-20 102.4 140 47.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.4e-20 102.1 132 50.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.5e-20 101.7 121 50.4
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-20 101.7 136 53.7
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 4.5e-20 101.7 123 52.8
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 4.5e-20 101.7 131 45.8
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.9e-20 101.3 128 49.2
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 5.9e-20 101.3 134 47.8
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.9e-20 101.3 130 60.8
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.0e-19 100.5 129 52.7
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-19 100.5 132 50.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.0e-19 100.5 122 66.4
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.0e-19 100.5 144 47.2
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.3e-19 100.1 76 61.8
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-19 99.8 121 63.6
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.2e-19 99.4 120 66.7
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.2e-19 99.4 129 62.0
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.9e-19 99.0 121 63.6
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.9e-19 99.0 145 52.4
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 2.9e-19 99.0 139 51.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 3.8e-19 98.6 81 63.0
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.8e-19 98.6 122 63.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.8e-19 98.6 126 62.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.1e-18 97.1 127 47.2
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-18 97.1 116 66.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.4e-18 96.7 131 57.3
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.4e-18 96.7 81 63.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.5e-18 95.9 91 60.4
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-18 95.9 117 59.8
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.2e-18 95.1 130 47.7
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 7.2e-18 94.4 93 55.9
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 7.2e-18 94.4 126 46.8
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.6e-17 93.2 132 43.9
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.6e-17 93.2 132 43.9
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-17 92.8 94 54.3
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.1e-17 92.8 127 60.6
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.7e-17 92.4 134 53.0
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.1e-17 91.3 66 65.2
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.4e-16 90.1 78 56.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.0e-16 89.0 78 59.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.9e-16 88.6 77 58.4
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 6.7e-16 87.8 131 42.7
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 8.8e-16 87.4 75 60.0
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.1e-15 87.0 92 53.3
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.5e-15 86.7 160 43.1
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.0e-15 86.3 88 53.4
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.6e-15 85.9 79 55.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.6e-15 85.9 118 44.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.6e-15 85.9 130 48.5
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.6e-15 85.9 119 52.1
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 3.3e-15 85.5 89 53.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.4e-15 85.1 67 70.1
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 5.7e-15 84.7 79 55.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 7.4e-15 84.3 146 49.3
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 9.7e-15 84.0 77 59.7
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 9.7e-15 84.0 82 54.9
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.3e-14 83.6 107 61.7
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.3e-14 83.6 120 43.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.3e-14 83.6 120 43.3
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.2e-14 82.8 80 57.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.8e-14 82.4 125 43.2
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 3.7e-14 82.0 69 65.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.7e-14 82.0 66 68.2
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.8e-14 81.6 81 55.6
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.8e-14 81.6 73 60.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 8.2e-14 80.9 134 49.3
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 8.2e-14 80.9 85 51.8
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-13 80.1 91 50.5
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-13 80.1 91 50.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.4e-13 80.1 91 50.5
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.4e-13 80.1 147 53.7
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.8e-13 79.7 126 54.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 3.1e-13 79.0 71 60.6
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.1e-13 79.0 89 46.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.1e-13 78.6 81 50.6
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 4.1e-13 78.6 88 50.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.1e-13 78.6 142 52.8
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 5.3e-13 78.2 84 53.6
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 5.3e-13 78.2 124 39.5
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.0e-13 77.8 80 58.8
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.1e-13 77.4 117 41.9
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 9.1e-13 77.4 83 49.4
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.2e-12 77.0 164 40.9
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.0e-12 76.3 127 54.3
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.5e-12 75.1 77 50.6
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.0e-11 73.9 84 45.2
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.0e-11 73.9 124 39.5
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.7e-11 73.2 77 49.4
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 1.7e-11 73.2 82 47.6
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.2e-11 72.8 88 44.3
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.2e-11 72.8 91 45.1
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 2.9e-11 72.4 77 45.5
CDE02G3795 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.9e-11 72.4 54 68.5
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.9e-11 72.4 158 41.1
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.9e-11 72.4 144 38.2
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.8e-11 72.0 74 55.4
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 3.8e-11 72.0 130 38.5
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 5.0e-11 71.6 90 42.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 5.0e-11 71.6 80 52.5
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.0e-11 71.6 82 46.3
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 6.5e-11 71.2 93 43.0
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 8.5e-11 70.9 88 44.3
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 8.5e-11 70.9 112 48.2
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 8.5e-11 70.9 80 52.5
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.1e-10 70.5 84 45.2
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.5e-10 70.1 74 54.1
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.9e-10 69.7 91 46.2
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 4.2e-10 68.6 84 47.6
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 7.2e-10 67.8 73 49.3
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.4e-10 67.4 69 60.9
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.6e-09 66.6 75 49.3
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.1e-09 66.2 56 60.7
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.1e-09 66.2 78 50.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 2.7e-09 65.9 118 37.3
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 2.7e-09 65.9 116 39.7
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 2.7e-09 65.9 76 46.1
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 4.0e-08 62.0 69 52.2
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 3.3e-07 58.9 71 50.7
FAN07G0344 Fragaria x ananassa HOM05D002141 ORTHO05D002119 7.5e-07 57.8 59 52.5
Rhsim12G0134200 Rhododendron simsii HOM05D003853 ORTHO05D004171 7.5e-07 57.8 53 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2292 Anthoceros agrestis HOM05D030757 ORTHO05D004171 2.2e-06 56.2 78 43.6


User provided reference genes

Program Settings