Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23303 Nelumbo nucifera HOM05D007053 ORTHO05D008922 3.9e-193 677.9 340 100.0
TAR629G2828 Trochodendron aralioides HOM05D007053 ORTHO05D008922 3.6e-146 521.9 336 79.2
Aqoxy3G03518 Aquilegia oxysepala HOM05D007053 ORTHO05D008922 2.0e-141 506.1 338 74.0
Dinv16695 Davidia involucrata HOM05D007053 ORTHO05D008922 5.6e-139 498.0 338 73.7
Manes.01G031400 Manihot esculenta HOM05D007053 ORTHO05D008922 5.6e-139 498.0 317 78.2
GSVIVG01001339001 Vitis vinifera HOM05D007053 ORTHO05D008922 3.6e-138 495.4 327 76.1
Potri.010G162900 Populus trichocarpa HOM05D007053 ORTHO05D008922 8.0e-138 494.2 325 76.6
Atru.chr11.1705 Acer truncatum HOM05D007053 ORTHO05D008922 1.4e-137 493.4 327 75.8
PSO063G1507 Papaver somniferum HOM05D007053 ORTHO05D008922 1.4e-137 493.4 345 74.2
PSO063G7037 Papaver somniferum HOM05D007053 ORTHO05D008922 1.2e-136 490.3 344 73.3
CSS0045311 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 1.5e-136 490.0 334 73.4
CSS0030124 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 7.5e-136 487.6 334 73.1
Duzib248G0053 Durio zibethinus HOM05D007053 ORTHO05D008922 1.3e-135 486.9 319 75.9
Sabra10G0123900 Salix brachista HOM05D007053 ORTHO05D008922 1.7e-135 486.5 317 76.3
Migut.L01233 Erythranthe guttata HOM05D007053 ORTHO05D008922 1.1e-134 483.8 332 72.3
Gohir.A13G079000 Gossypium hirsutum HOM05D007053 ORTHO05D008922 1.1e-134 483.8 319 76.2
Gorai.013G090300 Gossypium raimondii HOM05D007053 ORTHO05D008922 3.2e-134 482.3 319 75.9
Thecc.02G338500 Theobroma cacao HOM05D007053 ORTHO05D008922 3.5e-133 478.8 318 75.2
CiPaw.06G089300 Carya illinoinensis HOM05D007053 ORTHO05D008922 1.0e-132 477.2 318 74.8
PGR102G0611 Punica granatum HOM05D007053 ORTHO05D008922 1.7e-132 476.5 322 73.0
MSTRG.7772 Avicennia marina HOM05D007053 ORTHO05D008922 2.3e-132 476.1 329 72.9
Cfa008919 Carpinus fangiana HOM05D007053 ORTHO05D008922 5.0e-132 474.9 318 75.2
Actinidia33234 Actinidia chinensis HOM05D007053 ORTHO05D008922 9.5e-131 470.7 334 71.3
Ciclev10031995m.g Citrus clementina HOM05D007053 ORTHO05D008922 1.2e-130 470.3 336 71.1
ClCG09G022040 Citrullus lanatus HOM05D007053 ORTHO05D008922 1.6e-130 469.9 328 72.9
Lsat_1_v5_gn_8_46861 Lactuca sativa HOM05D007053 ORTHO05D008922 1.6e-130 469.9 333 70.3
MELO3C002980.2 Cucumis melo HOM05D007053 ORTHO05D008922 6.2e-130 468.0 319 73.7
Lalb_Chr10g0098501 Lupinus albus HOM05D007053 ORTHO05D008922 6.2e-130 468.0 333 72.7
FAN22G2353 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.8e-129 466.5 329 70.5
Carub.0001s2439 Capsella rubella HOM05D007053 ORTHO05D008922 4.0e-129 465.3 337 68.8
FAN07G1757 Fragaria x ananassa HOM05D007053 ORTHO05D008922 4.0e-129 465.3 329 70.5
FAN22G1358 Fragaria x ananassa HOM05D007053 ORTHO05D008922 4.0e-129 465.3 329 70.5
RcHm_v2.0_Chr4g0439031 Rosa chinensis HOM05D007053 ORTHO05D008922 4.0e-129 465.3 334 70.1
MD13G1067400 Malus domestica HOM05D007053 ORTHO05D008922 5.2e-129 464.9 337 69.7
Thhalv10008165m.g Eutrema salsugineum HOM05D007053 ORTHO05D008922 8.9e-129 464.2 317 72.6
AL1G39090 Arabidopsis lyrata HOM05D007053 ORTHO05D008922 1.2e-128 463.8 317 71.9
Sc04g0007810 Simmondsia chinensis HOM05D007053 ORTHO05D008922 2.6e-128 462.6 336 69.6
Sed0004632 Sechium edule HOM05D007053 ORTHO05D008922 3.4e-128 462.2 320 73.1
Cc11_g12440 Coffea canephora HOM05D007053 ORTHO05D008922 4.4e-128 461.8 336 68.5
Lj2g0014226 Lotus japonicus HOM05D007053 ORTHO05D008922 4.4e-128 461.8 333 71.2
TPR.G19934 Trifolium pratense HOM05D007053 ORTHO05D008922 7.5e-128 461.1 321 72.9
AT1G26640 Arabidopsis thaliana HOM05D007053 ORTHO05D008922 1.7e-127 459.9 319 71.2
Solyc04g005520.3 Solanum lycopersicum HOM05D007053 ORTHO05D008922 3.7e-127 458.8 319 70.5
Ca_04893_v3 Cicer arietinum L. HOM05D007053 ORTHO05D008922 4.9e-127 458.4 321 72.3
Psat2g127520 Pisum sativum HOM05D007053 ORTHO05D008922 4.9e-127 458.4 323 73.1
Sp1g22160 Schrenkiella parvula HOM05D007053 ORTHO05D008922 6.4e-127 458.0 324 70.4
FAN17G2706 Fragaria x ananassa HOM05D007053 ORTHO05D008922 8.3e-127 457.6 329 69.9
ECA233G1809 Erigeron canadensis HOM05D007053 ORTHO05D008922 1.4e-126 456.8 335 69.6
Sopen04g001540 Solanum pennellii HOM05D007053 ORTHO05D008922 1.4e-126 456.8 319 70.2
CARHR025330 Cardamine hirsuta HOM05D007053 ORTHO05D008922 1.9e-126 456.4 318 71.4
FvH4_4g30620 Fragaria vesca HOM05D007053 ORTHO05D008922 2.4e-126 456.1 329 69.6
Glyma.02G112200 Glycine max HOM05D007053 ORTHO05D008922 2.4e-126 456.1 321 72.6
Hund06137 Selenicereus undatus HOM05D007053 ORTHO05D008922 2.4e-126 456.1 318 71.4
Medtr5g042980 Medicago truncatula HOM05D007053 ORTHO05D008922 3.2e-126 455.7 321 72.3
Rhsim12G0133300 Rhododendron simsii HOM05D007053 ORTHO05D008922 4.1e-126 455.3 328 70.4
CANSAT64G1913 Cannabis sativa HOM05D007053 ORTHO05D008922 5.4e-126 454.9 339 69.3
AUR62005859 Chenopodium quinoa HOM05D007053 ORTHO05D008922 1.6e-125 453.4 330 69.1
Eucgr.B03188 Eucalyptus grandis HOM05D007053 ORTHO05D008922 1.6e-125 453.4 329 68.4
HanXRQChr08g0211061 Helianthus annuus HOM05D007053 ORTHO05D008922 1.6e-125 453.4 320 70.6
QL03p069977 Quercus lobata HOM05D007053 ORTHO05D008922 1.6e-125 453.4 327 70.0
THA.LOC104808621 Tarenaya hassleriana HOM05D007053 ORTHO05D008922 4.6e-125 451.8 318 71.1
C05p24370 Brassica napus HOM05D007053 ORTHO05D008922 1.0e-124 450.7 317 70.0
A09p40050 Brassica napus HOM05D007053 ORTHO05D008922 1.3e-124 450.3 317 70.7
BolC5t31171H Brassica oleracea HOM05D007053 ORTHO05D008922 1.3e-124 450.3 317 70.0
BcaC05g26403 Brassica carinata HOM05D007053 ORTHO05D008922 3.9e-124 448.7 317 70.0
Phvul.002G091000 Phaseolus vulgaris HOM05D007053 ORTHO05D008922 6.6e-124 448.0 333 69.4
Aa31LG7G8460 Aethionema arabicum HOM05D007053 ORTHO05D008922 1.5e-123 446.8 316 69.9
Lj3A1033T59 Lonicera japonica HOM05D007053 ORTHO05D008922 1.5e-123 446.8 336 66.7
BraA09t39501Z Brassica rapa HOM05D007053 ORTHO05D008922 1.9e-123 446.4 317 70.0
VMungo1215G2121 Vigna mungo HOM05D007053 ORTHO05D008922 7.3e-123 444.5 319 71.5
PGSC0003DMG400002850 Solanum tuberosum HOM05D007053 ORTHO05D008922 1.6e-122 443.4 330 67.6
CAN.G765.42 Capsicum annuum HOM05D007053 ORTHO05D008922 2.1e-122 443.0 308 70.5
ATR0730G101 Amborella trichopoda HOM05D007053 ORTHO05D008922 1.4e-121 440.3 316 71.5
COL.COLO4_27954 Corchorus olitorius HOM05D007053 ORTHO05D008922 2.3e-121 439.5 328 69.2
EL10Ac6g13278 Beta vulgaris HOM05D007053 ORTHO05D008922 1.7e-119 433.3 320 69.7
Haze_11947 Corylus avellana HOM05D007053 ORTHO05D008922 4.6e-117 425.2 318 68.9
arahy.Tifrunner.gnm1.ann1.8N8AS7 Arachis hypogaea HOM05D007053 ORTHO05D008922 6.2e-114 414.8 321 67.6
AUR62032851 Chenopodium quinoa HOM05D007053 ORTHO05D008922 1.1e-113 414.1 317 67.5
Nitab4.5_0011225g0030 Nicotiana tabacum HOM05D007053 ORTHO05D008922 3.1e-113 412.5 319 66.8
Zm00001eb370300 Zea mays HOM05D007053 ORTHO05D008922 3.1e-113 412.5 331 67.7
CsaV3_5G025100 Cucumis sativus L. HOM05D007053 ORTHO05D008922 5.2e-113 411.8 281 73.0
Peaxi162Scf00187g00127 Petunia axillaris HOM05D007053 ORTHO05D008922 1.2e-112 410.6 317 64.7
FAN12G2464 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.1e-110 404.1 281 70.8
Nitab4.5_0000014g0210 Nicotiana tabacum HOM05D007053 ORTHO05D008922 9.0e-105 384.4 270 71.5
SGA_v2.0_scaffold16G07742 Striga asiatica HOM05D007053 ORTHO05D008922 6.4e-103 378.3 358 58.4
vmacro16354 Vaccinium macrocarpon HOM05D007053 ORTHO05D008922 2.7e-101 372.9 383 53.8
TWI79G1311 Tripterygium wilfordii HOM05D007053 ORTHO05D008922 4.6e-101 372.1 320 61.9
Oeu021091.2 Olea europaea HOM05D007053 ORTHO05D008922 7.9e-101 371.3 388 54.1
Prupe.1G280800 Prunus persica HOM05D007053 ORTHO05D008922 1.7e-100 370.2 336 58.9
unitig_699.g19912 Utricularia gibba HOM05D007053 ORTHO05D008922 3.0e-100 369.4 333 59.5
Ah.02g129320 Amaranthus hybridus HOM05D007053 ORTHO05D008922 4.0e-97 359.0 352 58.0
Pp3c3_35320 Physcomitrium patens HOM05D007053 ORTHO05D008922 1.3e-90 337.4 315 55.6
SMO116G0352 Selaginella moellendorffii HOM05D007053 ORTHO05D008922 4.5e-88 328.9 317 56.2
MBI19_g40191_MAGBIO Magnolia biondii HOM05D007053 ORTHO05D008922 1.1e-86 324.3 207 76.8
Mapoly0180s0007 Marchantia polymorpha HOM05D007053 ORTHO05D008922 8.7e-84 314.7 328 51.5
DCAR_030987 Daucus carota HOM05D007053 ORTHO05D008922 6.5e-79 298.5 231 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2378 Anthoceros agrestis HOM05D007053 ORTHO05D008922 1.0e-71 274.6 302 51.7
QL03p070004 Quercus lobata HOM05D007053 ORTHO05D008922 1.8e-60 237.3 274 48.5
CBR_g29893 Chara braunii HOM05D007053 ORTHO05D008922 3.9e-60 236.1 347 41.8
CDE02G3282 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 5.2e-52 209.1 184 62.5
Cre13.g579800 Chlamydomonas reinhardtii HOM05D007053 ORTHO05D008922 4.4e-51 206.1 315 38.7
arahy.Tifrunner.gnm1.ann1.L47GGJ Arachis hypogaea HOM05D007053 ORTHO05D008922 8.5e-47 191.8 167 61.1
Pp3c8_2060 Physcomitrium patens HOM05D007053 ORTHO05D008922 8.0e-45 185.3 179 54.7
SEGI_12600 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 7.5e-43 178.7 119 68.1
CDE02G3739 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 9.1e-41 171.8 108 75.0
FAN17G3123 Fragaria x ananassa HOM05D007053 ORTHO05D008922 6.1e-37 159.1 97 78.4
MCO04G110 Micromonas commoda HOM05D007053 ORTHO05D008922 7.3e-22 109.0 226 34.5
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 1.2e-11 75.1 51 66.7
SEGI_13989 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 3.4e-11 73.6 77 54.5
Lsat_1_v5_gn_5_96721 Lactuca sativa HOM05D007053 ORTHO05D008922 1.7e-10 71.2 51 58.8
Os01g0764600 Oryza sativa ssp. japonica HOM05D007053 ORTHO05D008922 2.3e-07 60.8 83 47.0
AL2G14220 Arabidopsis lyrata HOM05D011085 ORTHO05D031413 9.5e-06 55.5 88 36.4


User provided reference genes

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