Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 2.7e-236 821.6 411 100.0
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 7.6e-175 617.5 406 75.6
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 1.5e-167 593.2 409 73.1
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 4.6e-164 581.6 410 71.0
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 7.4e-162 574.3 406 70.0
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 7.4e-162 574.3 406 70.2
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 2.1e-161 572.8 414 70.3
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 4.8e-161 571.6 407 70.8
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 1.1e-160 570.5 410 69.8
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 1.8e-160 569.7 412 69.7
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 3.4e-159 565.5 408 67.2
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 5.8e-159 564.7 407 69.5
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 3.8e-158 562.0 407 69.8
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 1.4e-157 560.1 403 69.2
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 1.4e-157 560.1 403 69.2
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 9.3e-157 557.4 391 70.8
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 2.7e-156 555.8 420 69.0
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 3.5e-156 555.4 393 70.2
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 7.9e-156 554.3 343 76.4
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 7.9e-156 554.3 417 65.7
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 1.8e-155 553.1 403 68.2
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 3.9e-155 552.0 345 75.9
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 4.3e-154 548.5 341 76.2
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 5.7e-154 548.1 403 67.2
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 5.7e-154 548.1 407 67.6
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 7.4e-154 547.7 411 67.4
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 1.3e-153 547.0 396 68.4
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 1.6e-153 546.6 407 68.1
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 5.3e-152 541.6 345 74.8
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 5.3e-152 541.6 390 67.9
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 6.9e-152 541.2 377 70.6
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 6.9e-152 541.2 409 64.8
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 1.2e-151 540.4 372 71.0
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 1.2e-151 540.4 346 74.6
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 2.6e-151 539.3 401 68.1
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 2.6e-151 539.3 418 66.7
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 3.4e-151 538.9 345 74.5
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 4.5e-151 538.5 385 68.6
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 2.2e-150 536.2 382 70.9
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 2.9e-150 535.8 416 66.6
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 5.0e-150 535.0 430 63.3
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 8.5e-150 534.3 410 65.4
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 8.5e-150 534.3 408 66.2
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 1.1e-149 533.9 388 68.0
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 1.4e-149 533.5 410 66.8
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 4.2e-149 531.9 411 67.2
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 7.2e-149 531.2 422 66.4
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 2.7e-148 529.3 409 66.3
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 6.1e-148 528.1 410 66.3
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 7.9e-148 527.7 402 65.2
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 7.9e-148 527.7 392 65.3
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 1.0e-147 527.3 412 63.6
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 1.8e-147 526.6 383 68.4
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 3.9e-147 525.4 309 79.9
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 5.1e-147 525.0 362 69.3
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 5.1e-147 525.0 411 65.2
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 1.1e-146 523.9 412 63.6
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 3.3e-146 522.3 412 63.3
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 5.7e-146 521.5 412 63.1
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 2.2e-145 519.6 348 72.4
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 3.7e-145 518.8 402 64.9
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 3.1e-144 515.8 362 69.6
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 9.1e-144 514.2 421 63.9
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 1.2e-143 513.8 373 68.9
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 1.2e-143 513.8 373 68.9
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.5e-143 513.5 367 68.4
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 2.0e-143 513.1 368 68.8
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 2.6e-143 512.7 414 62.3
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 3.4e-143 512.3 353 70.5
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 3.4e-143 512.3 367 68.1
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 3.4e-143 512.3 380 68.4
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 4.5e-143 511.9 342 70.8
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.3e-142 510.4 367 68.1
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 1.7e-142 510.0 405 62.2
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 2.9e-142 509.2 430 60.9
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 6.5e-142 508.1 404 64.4
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 2.5e-141 506.1 367 68.1
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 2.5e-141 506.1 400 62.0
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 4.2e-141 505.4 344 70.9
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 5.5e-141 505.0 375 67.7
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 7.2e-141 504.6 402 64.9
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 7.2e-141 504.6 402 64.9
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 6.1e-140 501.5 415 62.2
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.8e-139 500.0 321 75.7
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 2.0e-138 496.5 318 72.6
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 4.1e-136 488.8 415 61.0
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 3.5e-135 485.7 317 72.2
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 7.7e-135 484.6 369 63.4
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 1.1e-133 480.7 345 68.4
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 1.0e-131 474.2 378 63.5
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 1.6e-127 460.3 403 60.0
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 5.0e-126 455.3 309 71.2
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 3.6e-124 449.1 340 65.6
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 4.0e-123 445.7 373 60.3
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 1.2e-122 444.1 296 71.6
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 5.9e-119 431.8 312 70.8
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 1.7e-110 403.7 251 74.9
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 2.3e-110 403.3 412 50.7
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 5.0e-110 402.1 256 74.6
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 2.8e-108 396.4 350 60.3
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 4.0e-107 392.5 257 72.0
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 1.5e-101 374.0 347 62.0
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 4.1e-96 355.9 414 48.3
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 7.3e-93 345.1 285 63.9
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 4.4e-90 335.9 239 66.9
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 4.3e-85 319.3 357 43.7
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 9.5e-85 318.2 365 43.8
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 3.1e-67 260.0 182 67.0
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 5.4e-64 249.2 344 36.9
BcaC06g30885 Brassica carinata HOM05D006813 ORTHO05D008657 8.7e-46 188.7 121 70.2
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.5e-41 172.6 159 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 1.5e-37 161.4 260 37.7
SalBow1G7870 Salvia bowleyana HOM05D006813 ORTHO05D008657 3.3e-37 160.2 91 80.2
TPR.G26199 Trifolium pratense HOM05D006813 ORTHO05D001332 1.1e-35 155.2 101 70.3
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 9.0e-35 152.1 151 52.3
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 8.5e-33 145.6 97 71.1
HanXRQChr08g0223741 Helianthus annuus HOM05D006813 ORTHO05D008657 2.8e-20 104.0 95 55.8
ECA247G1425 Erigeron canadensis HOM05D006813 ORTHO05D008657 2.1e-15 87.8 53 67.9
TAR633G2432 Trochodendron aralioides HOM05D006813 ORTHO05D414814 3.6e-15 87.0 93 51.6
Haze_14448 Corylus avellana HOM05D006813 ORTHO05D008657 1.9e-08 64.7 134 39.6


User provided reference genes

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