Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 5.7e-92 340.9 171 100.0
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.9e-72 275.4 152 88.8
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 5.6e-71 271.2 152 86.2
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.5e-71 270.4 152 86.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.5e-71 270.4 152 86.2
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 4.7e-70 268.1 152 85.5
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 4.7e-70 268.1 152 85.5
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 2.3e-69 265.8 152 83.6
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 4.4e-68 261.5 152 82.2
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 4.4e-68 261.5 152 82.2
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.8e-68 261.2 152 82.9
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.8e-68 261.2 152 82.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 5.8e-68 261.2 152 82.2
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 9.8e-68 260.4 157 81.5
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.3e-67 260.0 152 81.6
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.3e-67 260.0 152 82.9
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.7e-67 259.6 152 82.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.7e-67 259.6 152 82.2
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.2e-67 259.2 152 81.6
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.2e-67 259.2 152 82.9
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 2.9e-67 258.8 173 75.1
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 3.7e-67 258.5 152 81.6
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 8.3e-67 257.3 152 82.2
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 8.3e-67 257.3 157 81.5
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-66 256.9 152 81.6
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.1e-66 256.9 173 74.6
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.4e-66 256.5 152 81.6
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.4e-66 256.5 152 82.2
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.9e-66 256.1 152 80.9
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 5.4e-66 254.6 152 82.9
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 7.0e-66 254.2 152 80.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.2e-65 253.4 152 79.6
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.2e-65 253.4 152 79.6
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.6e-65 253.1 152 81.6
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.0e-65 252.7 172 73.3
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 3.5e-65 251.9 153 81.7
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 7.8e-65 250.8 152 79.6
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 7.8e-65 250.8 152 80.9
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.0e-64 250.4 152 80.3
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 3.0e-64 248.8 167 73.7
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 5.0e-64 248.1 174 72.4
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 5.0e-64 248.1 152 77.6
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 6.6e-64 247.7 152 78.3
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 6.6e-64 247.7 151 80.1
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 6.6e-64 247.7 152 78.9
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 8.6e-64 247.3 152 77.6
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.1e-63 246.9 152 80.3
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.1e-63 246.9 152 78.3
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 4.3e-63 245.0 151 78.8
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 4.3e-63 245.0 152 78.9
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 9.5e-63 243.8 152 75.7
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 9.5e-63 243.8 152 75.7
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.8e-62 242.3 152 75.7
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 6.2e-62 241.1 152 75.0
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 6.2e-62 241.1 152 77.6
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 8.0e-62 240.7 152 77.6
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.8e-61 239.6 152 78.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.8e-61 239.6 152 75.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.3e-61 239.2 152 78.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.3e-61 239.2 152 78.3
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.9e-61 237.3 152 77.6
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.5e-60 236.5 173 71.1
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.6e-60 235.7 153 73.2
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.4e-60 235.0 152 73.0
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 5.8e-60 234.6 152 72.4
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 7.5e-60 234.2 152 76.3
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 7.5e-60 234.2 152 75.0
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 9.8e-60 233.8 152 73.0
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 9.8e-60 233.8 152 74.3
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.7e-59 231.9 152 75.7
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 6.4e-59 231.1 152 75.0
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 6.4e-59 231.1 152 75.0
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 8.3e-59 230.7 152 75.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.1e-58 230.3 151 74.2
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-58 230.3 152 73.7
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.4e-58 229.9 152 71.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.4e-58 229.2 166 69.3
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.1e-58 228.4 166 69.3
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 7.1e-58 227.6 152 73.0
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 9.2e-58 227.3 152 73.0
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.2e-57 226.9 152 72.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.1e-57 226.1 152 73.0
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.5e-57 225.3 152 73.0
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 4.6e-57 224.9 152 72.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 6.0e-57 224.6 152 72.4
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 6.0e-57 224.6 152 71.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.3e-56 223.4 152 69.1
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.7e-56 223.0 152 71.1
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 3.0e-56 222.2 152 69.7
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.6e-54 216.5 152 69.1
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 2.1e-54 216.1 152 68.4
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 2.8e-54 215.7 123 84.6
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 8.1e-54 214.2 237 51.5
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.4e-53 213.4 147 68.0
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 6.8e-53 211.1 154 64.3
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.5e-52 209.9 170 60.0
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 4.4e-52 208.4 152 67.1
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.9e-51 204.9 120 81.7
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.3e-51 204.1 148 66.9
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.7e-49 199.1 126 78.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 4.6e-49 198.4 198 55.6
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.1e-46 189.5 159 58.5
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 2.8e-46 189.1 152 61.2
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 7.6e-44 181.0 152 56.6
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 9.9e-44 180.6 152 57.9
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 1.7e-43 179.9 152 56.6
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 8.4e-43 177.6 172 52.3
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 8.4e-43 177.6 152 55.9
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.9e-42 176.4 153 56.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 4.2e-42 175.3 150 56.7
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 7.1e-42 174.5 152 55.9
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 9.3e-42 174.1 148 56.8
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 2.7e-41 172.6 148 56.1
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.7e-41 172.6 148 56.1
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.7e-41 172.6 148 56.1
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.0e-41 171.4 103 84.5
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.3e-40 169.5 148 55.4
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.0e-40 169.1 152 61.2
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.9e-40 168.7 142 57.0
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.9e-40 168.7 142 57.0
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.5e-39 166.8 176 56.2
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.1e-38 162.9 148 54.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.4e-34 149.4 152 56.6
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 1.9e-31 139.8 148 50.0
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.7e-27 126.7 78 73.1
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 2.7e-25 119.4 92 68.5
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 2.3e-24 116.3 73 74.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.3e-22 110.5 80 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 9.0e-21 104.4 151 41.1
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 3.4e-20 102.4 151 39.1
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.0e-19 100.9 118 44.1
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.4e-18 97.1 88 56.8
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 9.3e-18 94.4 152 34.2
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.9e-15 86.7 83 53.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.2e-14 81.3 57 70.2
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 3.4e-12 75.9 50 76.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.7e-11 73.6 45 84.4
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.0e-11 72.0 114 43.0
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.5e-11 71.6 89 51.7
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-10 70.5 79 50.6
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-10 70.5 79 50.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 1.5e-07 60.5 45 62.2
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.9e-07 60.1 50 66.0


User provided reference genes

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