Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 0.0e+00 1341.3 685 100.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.4e-305 1051.2 687 74.5
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.3e-275 953.0 691 67.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.2e-273 946.4 696 67.1
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 4.7e-262 907.9 694 64.1
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.0e-261 905.2 646 68.7
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 5.7e-260 901.0 693 64.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.1e-258 895.2 639 68.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.2e-257 893.3 688 63.7
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.8e-256 888.3 690 63.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 4.4e-252 874.8 691 61.4
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 5.8e-252 874.4 706 60.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.3e-251 873.2 695 62.3
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.7e-251 871.7 690 62.5
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 8.3e-251 870.5 693 62.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 4.1e-250 868.2 684 62.3
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 5.4e-250 867.8 689 61.4
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.0e-248 862.1 685 61.0
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.1e-246 855.9 695 61.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 4.7e-246 854.7 693 60.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.4e-245 853.2 703 61.0
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.0e-245 851.7 685 60.4
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 5.2e-245 851.3 685 61.6
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.2e-244 850.1 688 62.5
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.0e-240 837.0 682 60.0
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.5e-239 832.4 641 62.4
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.8e-238 828.9 706 58.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.1e-237 825.5 637 63.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 6.8e-237 824.3 680 59.9
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.1e-234 817.0 693 59.6
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.1e-234 817.0 697 59.7
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.0e-232 808.9 686 58.2
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.3e-231 805.1 686 56.4
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 5.8e-228 794.7 840 52.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.3e-227 793.5 703 56.0
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.4e-227 791.2 729 55.1
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-225 786.9 693 58.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.7e-225 785.8 692 55.5
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.9e-223 779.6 708 57.6
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 5.6e-223 778.1 696 54.5
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 9.6e-223 777.3 688 56.1
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.8e-222 775.8 701 56.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.2e-220 770.4 704 55.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-220 769.6 699 57.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.0e-220 769.6 703 55.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-220 769.2 696 55.3
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.1e-218 763.8 693 54.1
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.1e-218 763.8 705 56.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.4e-218 762.7 695 54.8
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 7.1e-218 761.1 732 54.8
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.6e-217 760.0 700 53.4
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.3e-214 750.4 636 56.3
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.1e-214 749.6 645 58.8
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 2.8e-214 749.2 701 53.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 4.8e-214 748.4 720 54.6
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 4.8e-214 748.4 704 54.0
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 8.1e-214 747.7 697 54.8
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.0e-213 745.3 689 55.2
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 5.3e-213 745.0 653 55.1
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.5e-212 743.4 644 55.7
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.5e-212 743.4 702 53.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.8e-212 741.5 637 58.6
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 4.9e-211 738.4 702 52.7
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 4.9e-211 738.4 696 54.6
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.1e-210 737.3 645 54.9
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.2e-210 735.7 647 55.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.5e-209 732.3 647 54.4
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.8e-208 729.9 762 50.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.8e-205 719.9 670 53.0
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.9e-205 718.0 702 52.1
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 6.9e-205 718.0 686 53.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-202 710.7 686 54.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.7e-200 701.4 690 51.7
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.3e-198 697.2 653 56.0
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 2.8e-198 696.0 690 51.6
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 6.9e-197 691.4 697 50.4
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.0e-192 676.0 654 53.5
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.3e-190 670.6 644 54.2
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 4.2e-186 655.6 599 55.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.6e-185 652.5 652 50.9
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.0e-184 651.0 684 48.8
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.8e-182 642.9 701 49.9
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 5.9e-180 635.2 683 48.8
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.0e-179 634.4 733 47.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.0e-179 632.1 430 71.9
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.4e-165 587.4 582 54.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.4e-165 586.6 453 63.1
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 7.0e-157 558.5 686 45.3
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.0e-156 557.0 689 43.5
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.3e-152 543.5 569 49.9
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 9.5e-146 521.5 378 66.4
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.2e-143 514.6 472 58.5
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 7.8e-140 501.9 331 75.2
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.1e-138 498.0 640 43.4
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 2.5e-138 496.9 450 55.8
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 9.8e-127 458.4 617 39.5
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.2e-116 424.9 589 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 8.1e-113 412.1 543 41.3
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 1.9e-98 364.4 260 63.5
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.2e-85 320.5 351 45.6
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 4.6e-84 316.6 319 51.7
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 6.9e-80 302.8 267 57.3
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 5.9e-71 273.1 276 53.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 6.3e-65 253.1 216 56.0
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 6.9e-64 249.6 223 54.7
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 5.9e-63 246.5 261 48.7
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 7.7e-63 246.1 251 49.4
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.4e-58 229.6 206 56.8
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-56 225.7 331 39.0
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.2e-55 222.2 182 59.3
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.0e-50 204.9 511 30.9
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 4.2e-45 187.2 159 55.3
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.3e-43 181.4 155 57.4
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.2e-43 180.3 344 33.4
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-39 169.1 286 35.3
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.7e-39 167.9 168 48.8
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.5e-39 167.2 233 40.3
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.5e-37 160.2 328 32.6
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-33 147.9 197 39.6
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-32 144.4 188 42.0
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.7e-30 138.7 88 71.6
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-30 137.9 214 37.4
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-28 132.1 273 33.0
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.8e-27 126.7 327 30.3
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.7e-26 123.6 143 42.0
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-25 122.5 158 43.0
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-24 119.0 213 34.7
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.4e-24 118.2 485 23.9
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.4e-24 118.2 130 50.0
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 2.0e-23 115.2 148 45.3
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 4.6e-23 114.0 315 26.7
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.3e-22 112.5 418 28.2
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.6e-22 110.2 91 60.4
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-21 109.0 139 42.4
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-20 105.5 81 61.7
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 3.6e-20 104.4 104 52.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.2e-20 103.6 81 60.5
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.0e-19 100.9 208 32.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.9e-19 99.8 84 57.1
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.0e-18 98.6 190 30.0
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.2e-16 91.3 81 53.1
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 5.4e-16 90.5 96 52.1
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 7.0e-16 90.1 76 53.9
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.7e-15 88.2 50 78.0
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 4.6e-15 87.4 127 47.2
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.3e-14 85.9 58 70.7
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 1.3e-14 85.9 62 64.5
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-13 81.6 99 44.4
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 3.3e-13 81.3 62 61.3
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-13 80.5 173 30.6
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 9.5e-13 79.7 136 40.4
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.8e-12 78.2 81 51.9
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 3.6e-12 77.8 58 67.2
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-11 74.7 226 31.0
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.4e-09 67.0 52 63.5
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.2e-08 64.7 42 66.7
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 5.4e-08 63.9 34 82.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 7.1e-08 63.5 45 57.8
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 9.2e-08 63.2 42 66.7
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-07 62.4 35 71.4


User provided reference genes

Program Settings