Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 3.2e-190 668.3 345 100.0
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.1e-105 386.0 237 75.9
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 4.7e-101 372.1 232 73.7
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 8.8e-100 367.9 235 72.3
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.5e-99 367.1 264 68.6
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 3.3e-99 365.9 260 66.9
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 3.3e-99 365.9 243 70.0
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 5.7e-99 365.2 247 71.7
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 7.5e-99 364.8 239 70.3
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 1.3e-98 364.0 243 69.5
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 2.8e-98 362.8 233 71.7
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 4.8e-98 362.1 240 69.6
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 6.3e-98 361.7 232 71.6
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 6.3e-98 361.7 233 70.8
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 8.2e-98 361.3 263 64.3
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.1e-97 360.9 232 71.6
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.4e-97 360.5 233 72.5
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.4e-97 359.8 243 68.7
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 4.1e-97 359.0 243 67.9
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.1e-97 359.0 239 70.3
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.1e-97 359.0 239 69.9
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 5.3e-97 358.6 239 67.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 7.0e-97 358.2 264 66.7
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 7.0e-97 358.2 239 70.3
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 9.1e-97 357.8 233 72.1
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 3.5e-96 355.9 240 70.8
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 3.5e-96 355.9 240 70.4
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 4.5e-96 355.5 232 70.7
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.3e-95 354.0 240 69.6
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 1.7e-95 353.6 236 69.1
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 2.9e-95 352.8 232 69.8
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 3.8e-95 352.4 244 67.2
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.0e-95 352.1 236 68.2
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 5.0e-95 352.1 237 67.1
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 5.0e-95 352.1 295 60.0
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 8.5e-95 351.3 240 67.9
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.5e-94 350.5 299 60.2
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.5e-94 350.5 243 66.3
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.5e-94 350.5 217 75.6
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.2e-93 347.4 237 67.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.7e-93 346.3 253 65.2
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.7e-93 346.3 254 66.9
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 3.6e-93 345.9 237 65.4
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 4.7e-93 345.5 238 68.5
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 4.7e-93 345.5 232 69.4
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 8.0e-93 344.7 231 66.7
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.4e-92 344.0 240 67.9
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.8e-92 343.6 246 65.4
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 2.3e-92 343.2 231 66.2
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.0e-92 342.8 239 66.5
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 3.0e-92 342.8 232 66.4
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 3.0e-92 342.8 238 68.1
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.0e-92 342.8 245 65.7
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 6.8e-92 341.7 231 65.4
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.2e-91 340.9 237 64.1
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.5e-91 340.5 231 64.5
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.0e-91 340.1 230 65.2
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 2.6e-91 339.7 232 68.1
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 3.4e-91 339.3 232 68.1
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 5.7e-91 338.6 232 67.2
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 5.7e-91 338.6 221 69.7
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 9.8e-91 337.8 241 68.0
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 1.7e-90 337.0 244 64.3
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.2e-90 336.7 238 67.2
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 2.2e-90 336.7 244 66.8
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-90 336.3 238 67.2
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 3.7e-90 335.9 238 62.6
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 3.7e-90 335.9 232 67.7
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 4.8e-90 335.5 251 64.5
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.1e-89 334.3 239 62.3
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.1e-89 334.3 231 64.5
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.4e-89 334.0 244 63.9
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.8e-89 333.6 239 64.4
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.8e-89 333.6 238 67.2
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.8e-89 333.6 238 66.8
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 2.4e-89 333.2 276 56.2
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 2.4e-89 333.2 276 56.5
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 2.4e-89 333.2 244 63.5
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 2.4e-89 333.2 238 66.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 2.4e-89 333.2 237 62.4
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 9.1e-89 331.3 239 61.9
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 9.1e-89 331.3 239 61.9
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 9.1e-89 331.3 238 65.5
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.2e-88 330.9 272 59.6
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 3.5e-88 329.3 232 65.9
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.5e-88 328.9 242 62.4
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.5e-88 328.9 243 60.5
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 7.7e-88 328.2 237 62.0
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.0e-87 327.8 233 62.7
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 5.0e-87 325.5 238 60.9
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 6.5e-87 325.1 233 63.5
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 6.5e-87 325.1 233 61.4
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 1.5e-86 323.9 282 57.8
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 5.5e-86 322.0 240 60.8
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 5.5e-86 322.0 235 63.0
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 5.5e-86 322.0 241 61.0
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 7.2e-86 321.6 235 62.6
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.6e-85 320.5 239 61.5
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 2.1e-85 320.1 240 60.8
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.6e-85 319.3 232 65.1
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 4.7e-85 318.9 235 62.1
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 5.2e-84 315.5 209 67.9
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.2e-83 314.3 238 59.2
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.2e-83 314.3 238 59.2
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.2e-83 314.3 237 62.4
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.3e-82 310.8 232 65.1
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.7e-82 310.5 237 59.9
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 4.1e-81 305.8 199 70.4
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 5.4e-81 305.4 199 70.4
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 6.6e-79 298.5 200 68.0
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.8e-76 290.4 223 59.6
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.2e-75 287.7 167 77.8
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 2.4e-73 280.0 260 52.7
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 5.4e-73 278.9 167 72.5
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.5e-72 276.2 234 58.1
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 8.6e-71 271.6 166 72.3
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 3.3e-70 269.6 239 54.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 2.8e-69 266.5 238 55.5
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.1e-68 263.1 197 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.1e-68 263.1 226 54.0
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.9e-68 261.5 235 54.0
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 5.8e-67 258.8 232 54.3
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.8e-61 240.0 168 62.5
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.6e-61 239.6 200 54.0
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 5.8e-59 232.3 129 79.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.4e-57 227.6 157 63.1
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 8.9e-52 208.4 188 53.2
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.6e-51 206.8 219 47.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.6e-51 206.8 238 43.7
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.7e-48 196.8 138 65.9
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.3e-46 189.5 232 46.1
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 9.6e-46 188.3 138 60.9
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 5.2e-44 182.6 117 70.1
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 5.2e-44 182.6 243 42.0
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 1.7e-42 177.6 117 68.4
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.2e-42 177.2 208 44.7
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.9e-41 174.1 136 57.4
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.0e-39 166.8 300 35.7
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 5.1e-39 166.0 253 37.2
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.3e-38 162.2 96 75.0
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 2.2e-34 150.6 122 59.0
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 3.4e-27 126.7 79 70.9
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.3e-26 124.8 107 55.1
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 3.5e-24 116.7 65 76.9
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.1e-20 105.1 99 48.5
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.3e-10 71.6 38 84.2
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 5.5e-09 66.2 171 28.1
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 3.3e-06 57.0 68 42.6


User provided reference genes

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