Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23185 Nelumbo nucifera HOM05D005738 ORTHO05D007135 8.2e-48 193.4 95 100.0
Aqoxy3G03402 Aquilegia oxysepala HOM05D005738 ORTHO05D007135 1.1e-23 113.2 98 60.2
Actinidia31900 Actinidia chinensis HOM05D005738 ORTHO05D007135 1.4e-23 112.8 95 60.0
Cfa008972 Carpinus fangiana HOM05D005738 ORTHO05D007135 1.4e-23 112.8 95 57.9
Haze_12004 Corylus avellana HOM05D005738 ORTHO05D007135 3.1e-23 111.7 95 56.8
CiPaw.05G134200 Carya illinoinensis HOM05D005738 ORTHO05D007135 5.3e-23 110.9 93 57.0
GSVIVG01023016001 Vitis vinifera HOM05D005738 ORTHO05D007135 7.0e-23 110.5 95 61.1
Thecc.02G344900 Theobroma cacao HOM05D005738 ORTHO05D007135 2.7e-22 108.6 97 59.8
Duzib251G0762 Durio zibethinus HOM05D005738 ORTHO05D007135 5.9e-22 107.5 97 60.8
CDE04G3278 Ceratophyllum demersum HOM05D005738 ORTHO05D007135 1.7e-21 105.9 87 60.9
MBI05_g34363_MAGBIO Magnolia biondii HOM05D005738 ORTHO05D007135 2.2e-21 105.5 59 84.7
Gohir.A12G164500 Gossypium hirsutum HOM05D005738 ORTHO05D007135 5.0e-21 104.4 95 55.8
Gohir.D12G167600 Gossypium hirsutum HOM05D005738 ORTHO05D007135 8.5e-21 103.6 95 55.8
Gorai.008G180500 Gossypium raimondii HOM05D005738 ORTHO05D007135 8.5e-21 103.6 95 55.8
MSTRG.706 Avicennia marina HOM05D005738 ORTHO05D007135 1.1e-20 103.2 87 60.9
Psat2g119200 Pisum sativum HOM05D005738 ORTHO05D007135 2.5e-20 102.1 87 57.5
Hma1.2p1_0795F.1_g218920 Hydrangea macrophylla HOM05D005738 ORTHO05D007135 3.2e-20 101.7 69 71.0
Rhsim12G0064100 Rhododendron simsii HOM05D005738 ORTHO05D007135 3.2e-20 101.7 86 58.1
Cpa.g.sc128.36 Carica papaya HOM05D005738 ORTHO05D007135 4.2e-20 101.3 87 55.2
Sp1g12550 Schrenkiella parvula HOM05D005738 ORTHO05D007135 5.5e-20 100.9 94 56.4
Oeu055111.1 Olea europaea HOM05D005738 ORTHO05D007135 9.4e-20 100.1 68 70.6
CANSAT64G2506 Cannabis sativa HOM05D005738 ORTHO05D007135 1.6e-19 99.4 70 68.6
TPR.G39224 Trifolium pratense HOM05D005738 ORTHO05D007135 1.6e-19 99.4 87 56.3
Ciclev10032918m.g Citrus clementina HOM05D005738 ORTHO05D007135 2.1e-19 99.0 90 56.7
PGR102G3221 Punica granatum HOM05D005738 ORTHO05D007135 2.7e-19 98.6 98 55.1
A09p62360 Brassica napus HOM05D005738 ORTHO05D007135 4.7e-19 97.8 94 55.3
CSS0032710 Camellia sinensis var. sinensis HOM05D005738 ORTHO05D007135 4.7e-19 97.8 88 56.8
Atru.chr11.1777 Acer truncatum HOM05D005738 ORTHO05D007135 8.0e-19 97.1 68 64.7
SalBow2G2920 Salvia bowleyana HOM05D005738 ORTHO05D007135 8.0e-19 97.1 92 55.4
BcaB08g34377 Brassica carinata HOM05D005738 ORTHO05D007135 1.0e-18 96.7 94 55.3
Medtr5g041290 Medicago truncatula HOM05D005738 ORTHO05D007135 1.0e-18 96.7 86 57.0
Potri.008G087100 Populus trichocarpa HOM05D005738 ORTHO05D007135 1.0e-18 96.7 69 65.2
BraA09t41601Z Brassica rapa HOM05D005738 ORTHO05D007135 1.4e-18 96.3 94 54.3
Cc00_g25960 Coffea canephora HOM05D005738 ORTHO05D007135 2.3e-18 95.5 67 65.7
CARHR014620 Cardamine hirsuta HOM05D005738 ORTHO05D007135 3.0e-18 95.1 94 54.3
Sabra08G0064900 Salix brachista HOM05D005738 ORTHO05D007135 3.0e-18 95.1 69 65.2
Sed0019595 Sechium edule HOM05D005738 ORTHO05D007135 3.0e-18 95.1 65 66.2
AL1G26090 Arabidopsis lyrata HOM05D005738 ORTHO05D007135 4.0e-18 94.7 94 55.3
Glyma.02G108200 Glycine max HOM05D005738 ORTHO05D007135 4.0e-18 94.7 97 51.5
Lsat_1_v5_gn_4_145980 Lactuca sativa HOM05D005738 ORTHO05D007135 4.0e-18 94.7 68 67.6
Sc14g0008110 Simmondsia chinensis HOM05D005738 ORTHO05D007135 5.2e-18 94.4 73 64.4
arahy.Tifrunner.gnm1.ann1.C6ZMY5 Arachis hypogaea HOM05D005738 ORTHO05D007135 6.8e-18 94.0 100 50.0
arahy.Tifrunner.gnm1.ann1.M1YF1C Arachis hypogaea HOM05D005738 ORTHO05D007135 6.8e-18 94.0 100 50.0
BcaC07g41589 Brassica carinata HOM05D005738 ORTHO05D007135 6.8e-18 94.0 94 53.2
C08p45920 Brassica napus HOM05D005738 ORTHO05D007135 6.8e-18 94.0 94 53.2
BolC8t52144H Brassica oleracea HOM05D005738 ORTHO05D007135 6.8e-18 94.0 94 53.2
Cc00_g24810 Coffea canephora HOM05D005738 ORTHO05D007135 1.2e-17 93.2 67 64.2
CsaV3_5G032760 Cucumis sativus L. HOM05D005738 ORTHO05D007135 1.2e-17 93.2 67 64.2
Prupe.1G275600 Prunus persica HOM05D005738 ORTHO05D007135 1.2e-17 93.2 84 56.0
ATR0681G265 Amborella trichopoda HOM05D005738 ORTHO05D007135 1.5e-17 92.8 90 57.8
ClCG05G024220 Citrullus lanatus HOM05D005738 ORTHO05D007135 1.5e-17 92.8 74 63.5
Lj2g0006642 Lotus japonicus HOM05D005738 ORTHO05D007135 1.5e-17 92.8 59 72.9
Manes.05G102100 Manihot esculenta HOM05D005738 ORTHO05D007135 1.5e-17 92.8 95 51.6
Hund25229 Selenicereus undatus HOM05D005738 ORTHO05D007135 1.5e-17 92.8 70 65.7
SGA_v2.0_scaffold31G12777 Striga asiatica HOM05D005738 ORTHO05D007135 1.5e-17 92.8 68 64.7
SGA_v2.0_scaffold47G17610 Striga asiatica HOM05D005738 ORTHO05D007135 1.5e-17 92.8 63 69.8
HanXRQChr09g0256931 Helianthus annuus HOM05D005738 ORTHO05D007135 2.0e-17 92.4 60 73.3
arahy.Tifrunner.gnm1.ann1.L6MMNY Arachis hypogaea HOM05D005738 ORTHO05D007135 2.6e-17 92.0 100 51.0
arahy.Tifrunner.gnm1.ann1.YAXL0T Arachis hypogaea HOM05D005738 ORTHO05D007135 3.4e-17 91.7 100 51.0
QL03p068731 Quercus lobata HOM05D005738 ORTHO05D007135 3.4e-17 91.7 99 50.5
RcHm_v2.0_Chr6g0288631 Rosa chinensis HOM05D005738 ORTHO05D007135 3.4e-17 91.7 97 50.5
Sopen05g003760 Solanum pennellii HOM05D005738 ORTHO05D007135 3.4e-17 91.7 71 63.4
ECA232G4216 Erigeron canadensis HOM05D005738 ORTHO05D007135 4.4e-17 91.3 57 75.4
Thhalv10008948m.g Eutrema salsugineum HOM05D005738 ORTHO05D007135 4.4e-17 91.3 93 52.7
Carub.0001s1389 Capsella rubella HOM05D005738 ORTHO05D007135 7.5e-17 90.5 95 53.7
Peaxi162Scf00222g00523 Petunia axillaris HOM05D005738 ORTHO05D007135 7.5e-17 90.5 97 50.5
PGSC0003DMG400018425 Solanum tuberosum HOM05D005738 ORTHO05D007135 7.5e-17 90.5 71 63.4
Cc01_g00500 Coffea canephora HOM05D005738 ORTHO05D007135 9.8e-17 90.1 61 68.9
COL.COLO4_22957 Corchorus olitorius HOM05D005738 ORTHO05D007135 9.8e-17 90.1 101 53.5
PSO339G5942 Papaver somniferum HOM05D005738 ORTHO05D007135 9.8e-17 90.1 57 73.7
Eucgr.B03215 Eucalyptus grandis HOM05D005738 ORTHO05D007135 1.3e-16 89.7 59 74.6
MD16G1072000 Malus domestica HOM05D005738 ORTHO05D007135 1.3e-16 89.7 63 65.1
TWI31G0211 Tripterygium wilfordii HOM05D005738 ORTHO05D007135 1.3e-16 89.7 96 50.0
unitig_22.g6513 Utricularia gibba HOM05D005738 ORTHO05D007135 1.7e-16 89.4 59 71.2
AT1G14205 Arabidopsis thaliana HOM05D005738 ORTHO05D007135 2.2e-16 89.0 95 53.7
VMungo1215G0821 Vigna mungo HOM05D005738 ORTHO05D007135 2.2e-16 89.0 97 46.4
FAN07G1335 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.7e-16 88.2 96 47.9
FAN22G1556 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.7e-16 88.2 64 62.5
RcHm_v2.0_Chr4g0439701 Rosa chinensis HOM05D005738 ORTHO05D007135 3.7e-16 88.2 96 47.9
THA.LOC104801796 Tarenaya hassleriana HOM05D005738 ORTHO05D007135 3.7e-16 88.2 90 47.8
HPP92_003355 Vanilla planifolia HOM05D005738 ORTHO05D007399 3.7e-16 88.2 71 66.2
Solyc05g007910.3 Solanum lycopersicum HOM05D005738 ORTHO05D007135 4.8e-16 87.8 66 63.6
Phvul.003G017400 Phaseolus vulgaris HOM05D005738 ORTHO05D007135 6.3e-16 87.4 97 45.4
Aa31LG1G840 Aethionema arabicum HOM05D005738 ORTHO05D007135 1.1e-15 86.7 93 49.5
EL10Ac2g03567 Beta vulgaris HOM05D005738 ORTHO05D007135 1.1e-15 86.7 73 57.5
AUR62005804 Chenopodium quinoa HOM05D005738 ORTHO05D007135 1.1e-15 86.7 103 49.5
FvH4_5g23030 Fragaria vesca HOM05D005738 ORTHO05D007135 1.1e-15 86.7 96 47.9
FAN17G0023 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.1e-15 86.7 64 60.9
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.4e-15 86.3 64 60.9
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.4e-15 86.3 64 60.9
FvH4_4g31280 Fragaria vesca HOM05D005738 ORTHO05D007135 2.4e-15 85.5 64 60.9
Lalb_Chr10g0098351 Lupinus albus HOM05D005738 ORTHO05D007135 2.4e-15 85.5 63 66.7
Nitab4.5_0003950g0020 Nicotiana tabacum HOM05D005738 ORTHO05D007135 3.1e-15 85.1 108 48.1
Migut.L01281 Erythranthe guttata HOM05D005738 ORTHO05D007135 4.1e-15 84.7 65 64.6
CAN.G1604.4 Capsicum annuum HOM05D005738 ORTHO05D007135 5.4e-15 84.3 66 62.1
AUR62032794 Chenopodium quinoa HOM05D005738 ORTHO05D007135 5.4e-15 84.3 103 50.5
Nitab4.5_0001555g0030 Nicotiana tabacum HOM05D005738 ORTHO05D007135 5.4e-15 84.3 76 59.2
DCAR_007157 Daucus carota HOM05D005738 ORTHO05D007135 1.2e-14 83.2 60 66.7
Nitab4.5_0000040g0260 Nicotiana tabacum HOM05D000556 ORTHO05D007135 7.7e-14 80.5 53 71.7
Os03g0169400 Oryza sativa ssp. japonica HOM05D005738 ORTHO05D007135 1.3e-13 79.7 53 69.8
FvH4_7g03450 Fragaria vesca HOM05D005738 ORTHO05D007135 2.3e-13 79.0 64 57.8
FAN22G1611 Fragaria x ananassa HOM05D005738 ORTHO05D007135 8.6e-13 77.0 96 43.8
Zm00001eb005360 Zea mays HOM05D005738 ORTHO05D007135 1.9e-12 75.9 53 66.0
Cc01_g02300 Coffea canephora HOM05D005738 ORTHO05D007135 2.5e-12 75.5 105 41.9
Zm00001eb402360 Zea mays HOM05D005738 ORTHO05D007135 2.5e-12 75.5 53 64.2
arahy.Tifrunner.gnm1.ann1.NUP0F7 Arachis hypogaea HOM05D005738 ORTHO05D007135 3.2e-12 75.1 100 45.0
FAN12G3611 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.2e-12 74.7 63 58.7
FvH4_4g31170 Fragaria vesca HOM05D005738 ORTHO05D007135 1.2e-11 73.2 60 60.0
Nn4g23184 Nelumbo nucifera HOM05D005738 ORTHO05D007135 2.8e-11 72.0 34 97.1
SEGI_26874 Sequoiadendron giganteum HOM05D005738 ORTHO05D007135 2.8e-11 72.0 54 61.1
FAN24G2090 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.0e-10 70.1 96 40.6
Os09g0439050 Oryza sativa ssp. japonica HOM05D005738 ORTHO05D007135 1.0e-10 70.1 70 54.3
Ca_04813_v3 Cicer arietinum L. HOM05D005738 ORTHO05D007135 6.8e-10 67.4 37 78.4
Dinv34149 Davidia involucrata HOM05D005738 ORTHO05D007135 2.6e-09 65.5 73 49.3
Aa31sc139G40 Aethionema arabicum HOM05D005738 ORTHO05D007135 4.4e-09 64.7 94 41.5
FAN13G2547 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.4e-09 64.7 37 75.7
HPP92_003354 Vanilla planifolia HOM05D005738 ORTHO05D007135 7.5e-09 63.9 34 88.2
vmacro01263 Vaccinium macrocarpon HOM05D005738 ORTHO05D007135 1.7e-08 62.8 38 71.1
Cc00_g35260 Coffea canephora HOM05D005738 ORTHO05D007135 2.2e-08 62.4 34 76.5
Lj3A1037T78 Lonicera japonica HOM05D005738 ORTHO05D007135 3.7e-08 61.6 34 79.4
Cc00_g33980 Coffea canephora HOM05D005738 ORTHO05D007135 6.3e-08 60.8 34 73.5
CBR_g48702 Chara braunii HOM05D005495 ORTHO05D006878 8.3e-08 60.5 54 50.0
Mapoly0060s0071 Marchantia polymorpha HOM05D005495 ORTHO05D006878 1.4e-07 59.7 56 53.6
Sed0019465 Sechium edule HOM05D005495 ORTHO05D006878 3.1e-07 58.5 58 50.0
CsaV3_3G015690 Cucumis sativus L. HOM05D005495 ORTHO05D006878 4.1e-07 58.2 66 45.5
Pp3c1_1240 Physcomitrium patens HOM05D005495 ORTHO05D006878 5.4e-07 57.8 77 41.6
Sed0015702 Sechium edule HOM05D005495 ORTHO05D006878 5.4e-07 57.8 68 45.6
Psat1g016560 Pisum sativum HOM05D005495 ORTHO05D006878 7.0e-07 57.4 82 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2340 Anthoceros agrestis HOM05D005495 ORTHO05D006878 1.2e-06 56.6 50 52.0
Lsat_1_v5_gn_5_109481 Lactuca sativa HOM05D005495 ORTHO05D006878 1.2e-06 56.6 50 54.0
ClCG05G007000 Citrullus lanatus HOM05D005495 ORTHO05D006878 1.6e-06 56.2 56 48.2
MELO3C006766.2 Cucumis melo HOM05D005495 ORTHO05D006878 1.6e-06 56.2 56 48.2
MELO3C012102.2 Cucumis melo HOM05D005738 ORTHO05D007135 2.7e-06 55.5 67 46.3
DCAR_026923 Daucus carota HOM05D005495 ORTHO05D006878 3.5e-06 55.1 59 47.5
FAN07G1573 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.5e-06 55.1 37 67.6
PSO170G2754 Papaver somniferum HOM05D005495 ORTHO05D006878 3.5e-06 55.1 56 48.2
Thecc.09G200200 Theobroma cacao HOM05D005495 ORTHO05D006878 3.5e-06 55.1 68 41.2
Dinv26490 Davidia involucrata HOM05D005495 ORTHO05D006878 4.5e-06 54.7 50 50.0
Glyma.09G077600 Glycine max HOM05D005495 ORTHO05D006878 5.9e-06 54.3 79 39.2
Nn1g08285 Nelumbo nucifera HOM05D005495 ORTHO05D006878 5.9e-06 54.3 50 52.0
Nn5g29782 Nelumbo nucifera HOM05D005495 ORTHO05D006878 5.9e-06 54.3 50 52.0
PSO357G0664 Papaver somniferum HOM05D005495 ORTHO05D006878 5.9e-06 54.3 56 48.2
Aqoxy5G02875 Aquilegia oxysepala HOM05D005495 ORTHO05D006878 7.8e-06 53.9 70 38.6
CSS0010244 Camellia sinensis var. sinensis HOM05D005495 ORTHO05D006878 7.8e-06 53.9 54 48.1
Cc04_g13640 Coffea canephora HOM05D005495 ORTHO05D006878 7.8e-06 53.9 73 39.7
FAN07G0874 Fragaria x ananassa HOM05D005495 ORTHO05D006878 7.8e-06 53.9 71 40.8


User provided reference genes

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