Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.7e-43 178.3 95 100.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.1e-28 129.8 95 73.7
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.6e-22 109.4 90 62.2
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 7.7e-22 107.1 96 62.5
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.8e-21 104.8 90 65.6
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.2e-19 99.8 93 58.1
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.3e-18 95.5 96 56.2
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.3e-18 95.5 86 62.8
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.0e-18 95.1 93 55.9
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.0e-18 94.7 93 55.9
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 5.2e-18 94.4 94 57.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 6.8e-18 94.0 91 58.2
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 8.8e-18 93.6 93 54.8
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-17 93.2 90 60.0
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-17 93.2 90 60.0
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.2e-17 93.2 91 56.0
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.2e-17 93.2 96 54.2
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.5e-17 92.8 94 59.6
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.6e-17 92.0 94 56.4
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.7e-16 89.4 96 57.3
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.7e-16 89.4 92 55.4
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 8.3e-16 87.0 87 59.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 8.3e-16 87.0 96 55.2
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.8e-15 85.9 91 56.0
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.4e-15 85.5 91 56.0
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 2.4e-15 85.5 97 55.7
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 4.1e-15 84.7 92 54.3
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 5.4e-15 84.3 96 57.3
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 7.0e-15 84.0 95 50.5
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.6e-14 82.8 90 53.3
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.6e-14 82.8 93 52.7
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.7e-14 82.0 93 50.5
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 3.5e-14 81.6 93 51.6
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.5e-14 81.3 93 52.7
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.5e-14 81.3 93 52.7
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 4.5e-14 81.3 93 49.5
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.9e-14 80.9 92 52.2
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 7.7e-14 80.5 93 47.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.0e-13 80.1 89 55.1
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 1.0e-13 80.1 93 45.2
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 1.3e-13 79.7 91 51.6
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.3e-13 79.7 89 50.6
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.7e-13 79.3 93 51.6
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 2.9e-13 78.6 96 50.0
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 3.8e-13 78.2 76 55.3
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 6.5e-13 77.4 83 51.8
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 6.5e-13 77.4 93 46.2
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 8.6e-13 77.0 88 54.5
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 1.9e-12 75.9 104 46.2
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 3.2e-12 75.1 90 53.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 4.2e-12 74.7 97 47.4
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 5.5e-12 74.3 96 47.9
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.2e-11 73.2 92 44.6
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-11 72.8 93 47.3
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.6e-11 72.8 96 46.9
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.1e-11 72.4 93 44.1
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.8e-11 72.0 93 46.2
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 4.7e-11 71.2 93 48.4
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 8.0e-11 70.5 91 51.6
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.0e-10 70.1 95 47.4
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.8e-10 69.3 97 44.3
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 2.3e-10 68.9 92 45.7
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.3e-10 68.9 95 45.3
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 3.0e-10 68.6 93 41.9
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.0e-10 68.2 95 45.3
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 4.0e-10 68.2 90 47.8
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.2e-10 67.8 95 46.3
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 5.2e-10 67.8 92 46.7
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 8.8e-10 67.0 94 45.7
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.5e-09 66.2 91 47.3
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.6e-09 65.5 94 42.6
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.6e-09 65.5 91 46.2
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 3.4e-09 65.1 82 47.6
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 3.4e-09 65.1 109 43.1
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 4.4e-09 64.7 97 43.3
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 4.4e-09 64.7 87 44.8
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 5.7e-09 64.3 72 56.9
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 5.7e-09 64.3 93 48.4
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 7.5e-09 63.9 88 43.2
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.5e-09 63.9 94 40.4
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 9.8e-09 63.5 85 48.2
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.8e-09 63.5 93 43.0
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.8e-09 63.5 91 46.2
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.8e-09 63.5 94 40.4
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 2.2e-08 62.4 86 39.5
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 2.8e-08 62.0 104 39.4
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 4.9e-08 61.2 91 47.3
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 6.3e-08 60.8 97 46.4
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.4e-07 59.7 87 43.7
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 1.8e-07 59.3 87 42.5
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.1e-07 58.2 75 45.3
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.1e-07 58.2 106 40.6
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 4.1e-07 58.2 94 45.7
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 5.4e-07 57.8 93 41.9
Ah.03g135070 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.6e-06 56.2 70 45.7
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-06 56.2 109 40.4
Os08g0438701 Oryza sativa ssp. japonica HOM05D007096 ORTHO05D008288 1.6e-06 56.2 93 41.9
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 2.0e-06 55.8 94 38.3
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.0e-06 55.8 96 44.8
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 2.7e-06 55.5 108 38.9
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 3.5e-06 55.1 86 46.5
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 3.5e-06 55.1 95 41.1
Phvul.002G085300 Phaseolus vulgaris HOM05D015099 ORTHO05D008288 4.5e-06 54.7 109 39.4
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 4.5e-06 54.7 85 47.1
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 7.8e-06 53.9 87 40.2


User provided reference genes

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