Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 5.3e-215 750.7 378 100.0
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 8.6e-165 583.9 375 78.1
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 6.2e-155 551.2 323 84.5
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 4.0e-146 521.9 367 70.6
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 1.9e-143 513.1 357 70.9
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 4.1e-143 511.9 357 70.9
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.2e-142 510.4 367 71.9
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 4.6e-142 508.4 386 68.9
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 8.6e-141 504.2 327 77.1
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 5.6e-140 501.5 335 72.8
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.6e-139 500.0 375 67.7
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 3.6e-139 498.8 327 75.8
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 3.6e-139 498.8 365 70.1
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 6.2e-139 498.0 367 69.5
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.1e-138 497.3 370 69.7
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 4.0e-138 495.4 312 78.5
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 2.6e-137 492.7 327 74.9
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 9.9e-137 490.7 382 67.8
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 9.9e-137 490.7 310 79.4
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.7e-136 490.0 361 67.3
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 4.9e-136 488.4 371 68.7
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.4e-135 486.9 327 74.3
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.9e-135 486.5 345 71.3
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 2.4e-135 486.1 327 74.6
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 2.4e-135 486.1 365 68.2
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 7.1e-135 484.6 329 73.9
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 1.6e-134 483.4 329 74.5
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 4.6e-134 481.9 330 73.3
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 7.8e-134 481.1 336 72.3
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 3.0e-133 479.2 321 74.1
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 3.9e-133 478.8 382 66.5
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.1e-132 477.2 314 75.2
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 1.5e-132 476.9 313 74.8
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 3.3e-132 475.7 330 73.3
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 4.3e-132 475.3 313 74.4
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 4.3e-132 475.3 360 66.9
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 7.3e-132 474.6 365 66.6
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 7.3e-132 474.6 341 70.1
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 9.6e-132 474.2 310 76.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 9.6e-132 474.2 327 72.5
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 3.6e-131 472.2 312 74.0
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 4.7e-131 471.9 311 74.6
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 6.2e-131 471.5 330 72.7
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 4.0e-130 468.8 312 73.4
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 5.2e-130 468.4 312 73.1
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 6.9e-130 468.0 329 70.5
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 6.9e-130 468.0 331 69.8
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 3.4e-129 465.7 322 70.8
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 3.4e-129 465.7 370 64.1
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 4.4e-129 465.3 329 70.2
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 4.4e-129 465.3 307 73.3
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 1.7e-128 463.4 326 70.9
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.2e-128 463.0 328 71.3
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 2.9e-128 462.6 331 71.0
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 4.9e-128 461.8 314 72.3
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 2.4e-127 459.5 426 58.9
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 3.2e-127 459.1 332 69.9
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 5.4e-127 458.4 323 70.3
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 3.5e-126 455.7 320 70.0
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 4.6e-126 455.3 326 68.1
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 7.8e-126 454.5 300 74.0
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 1.7e-125 453.4 304 73.7
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 2.3e-125 453.0 326 68.1
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 3.0e-125 452.6 312 71.5
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 5.1e-125 451.8 283 78.4
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 5.1e-125 451.8 311 72.3
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 1.1e-124 450.7 320 70.0
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.1e-124 450.7 325 68.3
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 1.1e-124 450.7 362 64.9
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 2.5e-124 449.5 327 67.9
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 2.5e-124 449.5 327 67.9
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 3.3e-124 449.1 362 63.0
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 7.3e-124 448.0 335 68.7
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.3e-123 447.2 315 71.7
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.8e-123 446.0 328 69.2
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 3.6e-123 445.7 326 67.5
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 8.1e-123 444.5 310 72.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 2.4e-122 443.0 338 67.2
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.1e-122 442.6 378 63.2
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 6.9e-122 441.4 324 67.6
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 2.6e-121 439.5 340 66.8
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 2.9e-120 436.0 327 66.7
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.4e-119 433.7 313 67.4
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 5.4e-119 431.8 315 69.5
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 3.9e-117 425.6 271 77.1
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 2.9e-112 409.5 320 64.7
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 2.9e-112 409.5 327 62.7
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 3.8e-112 409.1 272 74.3
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 8.4e-112 407.9 348 63.2
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 1.9e-111 406.8 311 65.3
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 2.5e-108 396.4 269 70.6
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 4.9e-104 382.1 275 70.2
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.6e-97 359.8 278 64.7
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 2.5e-95 353.2 307 56.0
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.6e-94 350.5 353 50.4
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.2e-89 334.3 307 53.7
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.2e-88 330.1 310 53.2
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 1.4e-87 327.4 312 54.2
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.4e-87 327.4 252 63.1
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.4e-79 298.1 313 48.6
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 1.0e-72 278.1 184 73.9
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.4e-69 267.7 342 49.1
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 1.4e-69 267.7 183 67.8
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 5.9e-65 252.3 216 62.5
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.3e-64 251.1 399 38.1
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.3e-64 251.1 399 38.1
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 2.5e-63 246.9 144 79.9
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 6.8e-61 238.8 226 56.2
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.0e-60 237.3 382 35.9
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 2.6e-60 236.9 324 42.0
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 8.0e-54 215.3 239 50.6
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.8e-51 206.8 508 29.1
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.2e-44 184.9 319 38.6
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 9.8e-44 181.8 168 60.1
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 3.0e-40 170.2 133 63.2
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 2.6e-36 157.1 120 64.2
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 2.0e-20 104.4 78 66.7
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 9.2e-18 95.5 61 70.5
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.1e-15 88.6 148 35.8
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 9.6e-15 85.5 145 37.2
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 2.9e-11 73.9 51 76.5
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.9e-11 73.9 150 34.7
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.2e-10 70.5 141 31.9
MD15G1234700 Malus domestica HOM05D006074 ORTHO05D248841 8.1e-06 55.8 42 57.1


User provided reference genes

Program Settings