Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23042 Nelumbo nucifera HOM05D008333 ORTHO05D010371 1.3e-130 469.9 279 100.0
Nn3g17126 Nelumbo nucifera HOM05D008333 ORTHO05D010371 8.3e-40 168.3 133 68.4
TAR481G0013 Trochodendron aralioides HOM05D008333 ORTHO05D010371 9.2e-31 138.3 192 46.4
TAR481G0008 Trochodendron aralioides HOM05D008333 ORTHO05D010371 1.2e-30 137.9 192 46.4
TAR371G0090 Trochodendron aralioides HOM05D008333 ORTHO05D010371 5.4e-23 112.5 110 56.4
COL.COLO4_25183 Corchorus olitorius HOM05D008333 ORTHO05D010371 1.6e-19 100.9 127 44.1
Duzib147G0630 Durio zibethinus HOM05D008333 ORTHO05D010371 8.9e-18 95.1 128 39.8
Thecc.04G074300 Theobroma cacao HOM05D008333 ORTHO05D010371 4.4e-17 92.8 118 39.8
CSS0029447 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.8e-17 92.4 114 43.0
CSS0048142 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.8e-17 92.4 114 43.0
Gohir.A09G021000 Gossypium hirsutum HOM05D008333 ORTHO05D010371 2.4e-15 87.0 103 39.8
Actinidia38746 Actinidia chinensis HOM05D008333 ORTHO05D010371 9.2e-15 85.1 122 40.2
Haze_14585 Corylus avellana HOM05D008333 ORTHO05D010371 2.1e-14 84.0 140 39.3
Potri.017G077100 Populus trichocarpa HOM05D008333 ORTHO05D010371 2.1e-14 84.0 126 37.3
Gohir.D09G020400 Gossypium hirsutum HOM05D008333 ORTHO05D010371 2.7e-14 83.6 132 36.4
Gorai.006G023800 Gossypium raimondii HOM05D008333 ORTHO05D010371 6.0e-14 82.4 111 37.8
Gorai.006G024100 Gossypium raimondii HOM05D008333 ORTHO05D010371 1.3e-13 81.3 132 34.1
Cfa007508 Carpinus fangiana HOM05D008333 ORTHO05D010371 8.6e-13 78.6 177 33.9
Gohir.D09G020550 Gossypium hirsutum HOM05D008333 ORTHO05D010371 1.9e-12 77.4 109 37.6
Gohir.D11G275775 Gossypium hirsutum HOM05D008333 ORTHO05D010371 4.3e-12 76.3 105 41.0
Gorai.007G297900 Gossypium raimondii HOM05D008333 ORTHO05D010371 4.3e-12 76.3 105 41.0
Manes.17G020900 Manihot esculenta HOM05D008333 ORTHO05D010371 4.7e-11 72.8 111 37.8
Eucgr.I01916 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.1e-10 71.6 141 33.3
Eucgr.I01914 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.4e-10 71.2 135 33.3
Eucgr.L02760 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.4e-10 71.2 137 33.6
Gohir.A11G265601 Gossypium hirsutum HOM05D008333 ORTHO05D010371 4.0e-10 69.7 92 40.2
Cfa021167 Carpinus fangiana HOM05D008333 ORTHO05D010371 5.2e-10 69.3 131 34.4
Prupe.3G272200 Prunus persica HOM05D008333 ORTHO05D010371 8.9e-10 68.6 134 32.8
CSS0005469 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 1.5e-09 67.8 146 30.8
MBI03_g33921_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.5e-09 67.8 132 37.1
Rhsim08G0065100 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.5e-09 67.8 124 33.9
Rhsim08G0065700 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.5e-09 67.8 112 35.7
FvH4_6g49300 Fragaria vesca HOM05D008333 ORTHO05D010371 2.6e-09 67.0 107 32.7
FAN14G1695 Fragaria x ananassa HOM05D008333 ORTHO05D010371 2.6e-09 67.0 107 32.7
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 2.6e-09 67.0 107 32.7
Rhsim08G0065500 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.6e-09 67.0 116 37.9
QL02p080535 Quercus lobata HOM05D008333 ORTHO05D010371 5.8e-09 65.9 117 35.9
Rhsim08G0066000 Rhododendron simsii HOM05D008333 ORTHO05D010371 5.8e-09 65.9 125 34.4
FvH4_6g49320 Fragaria vesca HOM05D008333 ORTHO05D010371 7.6e-09 65.5 107 32.7
FAN14G5614 Fragaria x ananassa HOM05D008333 ORTHO05D010371 7.6e-09 65.5 107 32.7
Os02g0216300 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 1.3e-08 64.7 118 37.3
Os06g0580100 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 1.3e-08 64.7 136 33.1
Rhsim08G0065300 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.3e-08 64.7 161 30.4
Rhsim08G0065400 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.3e-08 64.7 94 38.3
Rhsim08G0065800 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.2e-08 63.9 116 33.6
Os06g0147100 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 2.9e-08 63.5 102 41.2
MBI05_g05683_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 8.4e-08 62.0 107 39.3
CiPaw.03G030300 Carya illinoinensis HOM05D008333 ORTHO05D010371 1.1e-07 61.6 119 31.9
MBI06_g03980_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.1e-07 61.6 107 37.4
CSS0007512 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 4.1e-07 59.7 120 30.8
MBI18_g01155_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 4.1e-07 59.7 136 31.6
Zm00001eb339450 Zea mays HOM05D009627 ORTHO05D010887 4.1e-07 59.7 107 38.3
MBI03_g32214_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 5.4e-07 59.3 138 35.5
MBI18_g41917_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 9.2e-07 58.5 109 33.0
Os01g0714600 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 9.2e-07 58.5 121 37.2
RcHm_v2.0_Chr2g0169171 Rosa chinensis HOM05D008333 ORTHO05D010371 2.1e-06 57.4 107 29.9
Glyma.18G255500 Glycine max HOM05D008333 ORTHO05D010371 2.7e-06 57.0 116 28.4
MBI05_g28284_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D010887 2.7e-06 57.0 102 39.2
Os06g0146800 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 3.5e-06 56.6 107 36.4
MBI03_g35364_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 4.6e-06 56.2 171 31.6
RcHm_v2.0_Chr2g0169181 Rosa chinensis HOM05D008333 ORTHO05D010371 4.6e-06 56.2 103 30.1
MBI18_g00962_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 6.0e-06 55.8 105 35.2
Zm00001eb277260 Zea mays HOM05D009627 ORTHO05D010887 6.0e-06 55.8 142 29.6


User provided reference genes

Program Settings