Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.2e-42 176.0 84 100.0
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.9e-20 101.7 64 78.1
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.7e-20 101.3 64 78.1
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 4.9e-20 100.9 64 78.1
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.9e-20 100.9 64 76.6
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.9e-20 100.9 64 76.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 4.9e-20 100.9 64 78.1
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 6.4e-20 100.5 64 76.6
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 8.3e-20 100.1 64 75.0
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.9e-19 99.0 64 76.6
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.9e-19 99.0 64 75.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.9e-19 99.0 64 76.6
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.9e-19 99.0 64 76.6
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.9e-19 99.0 64 75.0
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 2.4e-19 98.6 64 75.0
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.4e-19 98.6 64 75.0
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.2e-19 98.2 64 73.4
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 4.1e-19 97.8 64 75.0
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 4.1e-19 97.8 64 73.4
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 4.1e-19 97.8 64 75.0
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 5.4e-19 97.4 64 75.0
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 5.4e-19 97.4 64 75.0
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 5.4e-19 97.4 64 75.0
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.4e-19 97.4 64 75.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.4e-19 97.4 64 75.0
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 5.4e-19 97.4 64 75.0
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 7.1e-19 97.1 64 73.4
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 7.1e-19 97.1 64 71.9
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.1e-19 97.1 64 75.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 9.2e-19 96.7 64 73.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 9.2e-19 96.7 64 73.4
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.2e-18 96.3 64 71.9
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.2e-18 96.3 64 71.9
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.2e-18 96.3 64 71.9
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.2e-18 96.3 64 71.9
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.6e-18 95.9 64 73.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.6e-18 95.9 64 75.0
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.6e-18 95.9 64 71.9
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.6e-18 95.9 64 71.9
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.6e-18 95.9 64 73.4
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 73.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 71.9
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 71.9
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 75.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 71.9
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 73.4
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 70.3
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 73.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.1e-18 95.5 64 73.4
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 71.9
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 71.9
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 71.9
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 71.9
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 75.0
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 75.0
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 2.7e-18 95.1 64 71.9
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.5e-18 94.7 64 70.3
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.5e-18 94.7 64 70.3
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 3.5e-18 94.7 64 71.9
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 4.6e-18 94.4 64 70.3
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 4.6e-18 94.4 64 71.9
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 4.6e-18 94.4 64 73.4
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 4.6e-18 94.4 64 71.9
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.0e-18 94.0 64 68.8
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 6.0e-18 94.0 64 70.3
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 6.0e-18 94.0 64 73.4
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 6.0e-18 94.0 64 70.3
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 6.0e-18 94.0 64 68.8
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 71.9
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 68.8
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 71.9
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 70.3
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 7.8e-18 93.6 64 71.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.0e-17 93.2 71 64.8
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.0e-17 93.2 64 70.3
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.0e-17 93.2 64 70.3
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.0e-17 93.2 64 71.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.0e-17 93.2 64 70.3
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.0e-17 93.2 64 70.3
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.3e-17 92.8 64 68.8
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-17 92.8 64 70.3
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.3e-17 92.8 64 70.3
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.7e-17 92.4 64 68.8
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.7e-17 92.4 64 68.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.7e-17 92.4 64 68.8
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-17 92.4 64 70.3
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.7e-17 92.4 64 71.9
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.7e-17 92.4 64 70.3
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.0e-17 91.7 64 70.3
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 3.0e-17 91.7 64 68.8
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 3.0e-17 91.7 64 67.2
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 3.0e-17 91.7 64 71.9
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 70.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 67.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 67.2
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 67.2
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 67.2
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 67.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 67.2
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 5.1e-17 90.9 64 68.8
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.1e-16 89.7 64 70.3
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.5e-16 89.4 64 67.2
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.5e-16 89.4 64 68.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.9e-16 89.0 64 65.6
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.9e-16 89.0 63 71.4
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.5e-16 88.6 63 69.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.6e-16 87.4 58 72.4
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 7.3e-16 87.0 57 71.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-15 86.3 63 68.3
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-15 86.3 63 68.3
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.6e-15 85.9 55 70.9
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.1e-15 85.5 63 66.7
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.6e-15 84.7 72 56.9
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.6e-15 84.7 55 72.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 4.7e-15 84.3 58 63.8
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 8.1e-15 83.6 55 72.7
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.6e-13 78.6 72 52.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.9e-12 75.1 64 59.4
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 6.4e-12 73.9 58 53.4
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 4.1e-11 71.2 58 51.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.2e-10 69.7 58 50.0
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 6.0e-10 67.4 56 55.4
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.7e-09 65.9 58 46.6
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.6e-09 63.9 51 62.7
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 5.6e-08 60.8 43 74.4
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.1e-07 58.9 37 78.4
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.8e-07 58.5 52 51.9


User provided reference genes

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