Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 1.7e-177 625.9 330 100.0
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 1.1e-110 404.1 329 67.2
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.5e-96 357.1 332 61.4
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 9.6e-96 354.4 335 62.4
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 8.2e-95 351.3 303 64.7
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 6.9e-94 348.2 317 64.0
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 1.5e-93 347.1 256 70.3
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.7e-92 343.6 340 59.7
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 5.0e-92 342.0 336 59.8
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 6.5e-92 341.7 335 60.6
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.4e-91 340.5 338 60.9
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.4e-91 340.5 252 70.2
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 1.9e-91 340.1 338 60.4
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.9e-91 340.1 339 59.9
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 2.5e-91 339.7 331 60.1
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.2e-91 339.3 339 60.2
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.2e-91 339.0 321 61.4
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 4.2e-91 339.0 335 60.6
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 9.3e-91 337.8 225 77.3
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.1e-90 336.7 335 59.4
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.7e-90 336.3 338 59.5
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 2.7e-90 336.3 329 58.4
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 4.6e-90 335.5 330 60.0
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 6.1e-90 335.1 332 59.9
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 1.0e-89 334.3 331 58.0
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.0e-89 334.3 334 58.7
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.3e-89 333.2 330 59.1
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 5.1e-89 332.0 321 59.8
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 6.7e-89 331.6 331 59.2
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 1.9e-88 330.1 274 64.2
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.9e-88 330.1 334 58.1
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.9e-88 330.1 241 72.6
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 2.5e-88 329.7 305 62.0
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 3.3e-88 329.3 302 62.6
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 3.3e-88 329.3 314 60.5
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 4.3e-88 328.9 329 58.4
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 4.3e-88 328.9 341 57.2
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 9.7e-88 327.8 239 70.7
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 9.7e-88 327.8 269 66.2
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 6.3e-87 325.1 288 62.2
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 6.3e-87 325.1 334 57.8
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.8e-86 323.6 308 61.4
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.8e-86 323.6 332 58.4
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.8e-86 323.6 306 60.1
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 2.4e-86 323.2 218 74.3
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 3.1e-86 322.8 218 74.3
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 3.1e-86 322.8 275 63.6
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 4.1e-86 322.4 203 79.8
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 5.3e-86 322.0 263 66.5
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 6.9e-86 321.6 206 79.1
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 1.5e-85 320.5 281 64.4
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 2.0e-85 320.1 277 62.1
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 2.0e-85 320.1 220 73.2
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.0e-85 320.1 350 55.4
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.6e-85 319.7 244 68.4
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 2.6e-85 319.7 329 57.4
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 3.4e-85 319.3 337 57.0
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 3.4e-85 319.3 220 72.7
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 3.4e-85 319.3 218 73.9
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 4.5e-85 318.9 250 65.2
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 4.5e-85 318.9 312 59.9
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 4.5e-85 318.9 301 60.1
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 5.9e-85 318.5 311 57.6
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 5.9e-85 318.5 312 60.6
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 7.7e-85 318.2 198 81.3
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 7.7e-85 318.2 284 60.2
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 7.7e-85 318.2 313 58.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.2e-84 316.6 197 79.7
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 2.9e-84 316.2 218 72.9
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.0e-84 315.5 340 54.7
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 6.5e-84 315.1 309 57.0
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 2.5e-83 313.2 315 60.6
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 7.2e-83 311.6 263 64.6
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 2.1e-82 310.1 268 62.7
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 4.6e-82 308.9 310 58.4
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 1.4e-81 307.4 327 54.7
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.8e-81 307.0 343 53.9
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 2.3e-81 306.6 309 57.3
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.3e-81 306.6 206 77.7
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 3.0e-81 306.2 331 55.3
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 5.1e-81 305.4 210 73.3
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 6.7e-81 305.1 236 69.1
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 8.8e-81 304.7 314 56.7
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 8.8e-81 304.7 220 70.9
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.1e-80 304.3 236 68.6
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 1.1e-80 304.3 328 54.0
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 3.3e-80 302.8 332 54.8
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 4.3e-80 302.4 332 54.5
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 4.3e-80 302.4 334 54.2
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 4.3e-80 302.4 312 57.1
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 2.2e-79 300.1 310 55.8
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 4.1e-78 295.8 245 64.1
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 5.3e-78 295.4 203 71.9
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 9.1e-78 294.7 347 51.3
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 1.5e-77 293.9 254 64.6
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 3.4e-77 292.7 339 52.5
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.4e-75 287.3 258 62.8
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 4.7e-74 282.3 303 57.1
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 6.7e-73 278.5 221 64.3
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 8.8e-73 278.1 338 50.0
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 1.1e-72 277.7 292 56.8
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 8.2e-71 271.6 303 51.8
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 3.5e-69 266.2 222 62.2
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 5.9e-69 265.4 196 67.9
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 7.7e-69 265.0 259 57.9
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 2.0e-61 240.4 322 45.3
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 5.9e-61 238.8 210 55.2
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.3e-60 237.7 219 55.3
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 4.2e-59 232.6 204 56.4
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.8e-55 219.9 150 73.3
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.0e-52 211.5 157 65.0
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 6.5e-52 208.8 263 44.5
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.6e-34 149.8 110 67.3
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.3e-31 141.4 176 45.5
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 6.0e-29 132.5 180 46.7
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 8.1e-26 122.1 211 44.1
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.4e-17 94.7 67 70.1
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 6.8e-17 92.4 91 57.1
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 2.1e-10 70.9 50 72.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 4.0e-09 66.6 55 69.1
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 7.6e-08 62.4 38 86.8


User provided reference genes

Program Settings