Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 1.3e-61 239.6 122 100.0
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 1.4e-20 103.2 76 69.7
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 3.5e-19 98.6 80 61.2
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.0e-18 97.1 97 55.7
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 1.0e-18 97.1 77 66.2
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 2.3e-18 95.9 82 59.8
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 2.3e-18 95.9 82 59.8
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 3.9e-18 95.1 84 59.5
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 6.6e-18 94.4 83 56.6
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 1.9e-17 92.8 84 57.1
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 1.9e-17 92.8 82 61.0
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 2.5e-17 92.4 83 59.0
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 3.3e-17 92.0 86 58.1
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 4.3e-17 91.7 79 59.5
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 7.3e-17 90.9 100 51.0
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.6e-16 89.7 88 55.7
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.6e-16 89.7 88 55.7
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 1.6e-16 89.7 82 59.8
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 2.1e-16 89.4 83 56.6
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 2.8e-16 89.0 84 56.0
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 2.8e-16 89.0 82 59.8
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 4.8e-16 88.2 84 56.0
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 6.2e-16 87.8 87 55.2
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 8.1e-16 87.4 84 58.3
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 1.1e-15 87.0 102 51.0
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 1.4e-15 86.7 87 54.0
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 1.4e-15 86.7 88 53.4
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 1.4e-15 86.7 82 56.1
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 2.4e-15 85.9 87 56.3
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 4.0e-15 85.1 83 53.0
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 6.9e-15 84.3 86 55.8
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 6.9e-15 84.3 87 55.2
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 1.2e-14 83.6 81 54.3
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 1.2e-14 83.6 82 57.3
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 1.2e-14 83.6 81 54.3
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 1.2e-14 83.6 82 57.3
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 1.5e-14 83.2 81 55.6
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 1.5e-14 83.2 83 55.4
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 2.0e-14 82.8 81 54.3
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 2.0e-14 82.8 83 54.2
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 2.6e-14 82.4 83 55.4
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 3.4e-14 82.0 117 45.3
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 3.4e-14 82.0 94 46.8
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 3.4e-14 82.0 93 49.5
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 4.5e-14 81.6 83 55.4
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 5.8e-14 81.3 97 46.4
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 7.6e-14 80.9 76 59.2
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 1.3e-13 80.1 79 57.0
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 1.7e-13 79.7 76 55.3
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.7e-13 79.7 89 49.4
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 2.2e-13 79.3 90 47.8
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 2.2e-13 79.3 82 54.9
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 6.4e-13 77.8 89 47.2
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 6.4e-13 77.8 89 47.2
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 1.1e-12 77.0 92 45.7
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 1.1e-12 77.0 88 48.9
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 1.9e-12 76.3 82 51.2
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 2.4e-12 75.9 75 49.3
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 7.1e-12 74.3 75 53.3
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 9.3e-12 73.9 101 40.6
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 9.3e-12 73.9 140 41.4
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 1.2e-11 73.6 92 45.7
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 1.6e-11 73.2 92 45.7
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 1.6e-11 73.2 92 45.7
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 1.6e-11 73.2 92 45.7
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 2.1e-11 72.8 126 42.1
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 2.1e-11 72.8 91 47.3
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 2.1e-11 72.8 79 55.7
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 6.0e-11 71.2 124 42.7
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 7.9e-11 70.9 88 46.6
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 7.9e-11 70.9 91 52.7
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 1.3e-10 70.1 89 43.8
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 1.8e-10 69.7 94 43.6
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 3.0e-10 68.9 91 44.0
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 3.9e-10 68.6 89 44.9
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 3.9e-10 68.6 94 44.7
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 1.1e-09 67.0 101 43.6
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 1.1e-09 67.0 89 43.8
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 1.1e-09 67.0 89 43.8
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 1.1e-09 67.0 110 40.9
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 2.5e-09 65.9 69 56.5
Lj6C173T11 Lonicera japonica HOM05D007453 ORTHO05D009223 2.5e-09 65.9 89 44.9
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 3.3e-09 65.5 82 46.3
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 3.3e-09 65.5 86 44.2
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 5.6e-09 64.7 128 36.7
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 9.6e-09 63.9 91 41.8
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 1.3e-08 63.5 130 38.5
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 1.6e-08 63.2 94 40.4
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 2.8e-08 62.4 94 39.4
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 3.7e-08 62.0 92 41.3
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 3.7e-08 62.0 127 37.8
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 6.2e-08 61.2 87 42.5
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 1.4e-07 60.1 83 47.0
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 3.4e-06 55.5 96 39.6


User provided reference genes

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