Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 5.3e-298 1026.9 519 100.0
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 3.9e-208 728.4 480 75.2
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 4.3e-207 724.9 477 74.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.4e-205 719.9 426 82.2
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 8.3e-203 710.7 477 74.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 4.1e-202 708.4 485 73.4
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 7.1e-202 707.6 431 80.0
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 7.8e-201 704.1 480 73.1
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 7.3e-199 697.6 480 71.7
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 4.7e-198 694.9 477 71.1
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 6.2e-198 694.5 477 72.5
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 6.2e-198 694.5 422 79.1
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 4.0e-197 691.8 413 79.7
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 5.2e-197 691.4 479 72.9
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 9.9e-196 687.2 513 68.0
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.2e-195 686.0 479 72.4
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 7.1e-194 681.0 487 69.2
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 9.2e-194 680.6 478 69.9
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.2e-193 680.2 431 76.3
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.6e-193 679.9 422 78.0
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 7.8e-193 677.6 431 76.1
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 7.8e-193 677.6 443 74.5
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.0e-192 677.2 478 69.7
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.3e-192 676.0 499 69.5
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 5.1e-192 674.9 459 70.8
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 1.5e-191 673.3 480 69.8
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 7.3e-191 671.0 465 69.9
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 1.6e-190 669.8 451 71.4
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 6.2e-190 667.9 478 68.4
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 6.2e-190 667.9 473 70.0
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.1e-189 667.2 510 67.3
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 3.1e-189 665.6 459 70.2
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.4e-188 662.1 484 68.0
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 2.2e-187 659.4 446 71.3
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 3.8e-187 658.7 488 69.9
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 3.8e-187 658.7 445 70.6
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.4e-186 656.8 449 70.4
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.4e-186 656.8 438 73.5
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.9e-186 656.4 481 69.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 4.2e-186 655.2 442 71.3
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 7.1e-186 654.4 431 73.8
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 4.3e-183 645.2 486 67.5
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 2.8e-182 642.5 438 71.7
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 9.0e-181 637.5 429 70.9
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 9.0e-181 637.5 462 68.0
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 2.0e-180 636.3 438 70.5
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 9.9e-180 634.0 444 69.6
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.3e-179 633.6 415 73.3
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 3.8e-179 632.1 413 73.8
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 6.4e-179 631.3 469 68.9
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 7.1e-178 627.9 417 73.4
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 3.9e-176 622.1 446 67.3
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 5.1e-176 621.7 446 68.6
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 5.1e-176 621.7 453 67.1
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.5e-175 620.2 406 74.1
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 1.5e-175 620.2 421 72.9
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.5e-175 619.4 448 67.9
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.6e-175 618.2 511 62.6
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 1.4e-173 613.6 450 67.8
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.4e-173 613.6 434 68.4
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 3.1e-173 612.5 437 70.7
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 9.0e-173 610.9 443 69.3
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.2e-172 610.5 495 64.0
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.5e-172 610.1 524 62.2
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.6e-172 609.4 454 66.7
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.3e-171 607.1 467 62.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 2.9e-171 605.9 455 66.2
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 1.9e-170 603.2 424 70.0
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.9e-170 603.2 452 67.0
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 3.2e-170 602.4 503 63.0
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.5e-170 601.7 510 61.8
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 1.2e-169 600.5 476 65.1
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 5.1e-168 595.1 472 64.4
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 6.7e-168 594.7 438 67.6
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.7e-168 594.7 479 64.5
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.5e-167 592.8 525 60.2
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 5.6e-167 591.7 352 79.8
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.4e-165 587.0 421 68.9
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.0e-163 580.9 382 73.3
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.2e-163 579.7 401 70.8
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.9e-163 579.3 430 67.0
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.1e-162 577.4 352 79.5
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 5.5e-162 575.1 557 55.3
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.9e-160 568.9 504 60.5
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.1e-160 568.5 510 59.6
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 8.4e-155 551.2 397 67.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 4.2e-154 548.9 404 67.6
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 9.0e-149 531.2 397 65.5
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 5.5e-146 521.9 438 62.1
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 1.1e-143 514.2 430 57.4
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.4e-141 506.5 480 58.3
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 3.1e-141 506.1 439 57.9
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 4.2e-138 495.7 374 67.9
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 7.4e-135 485.0 332 71.1
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.3e-134 484.2 427 59.3
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 9.4e-130 468.0 409 56.7
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 3.3e-127 459.5 323 71.8
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 3.0e-120 436.4 461 49.2
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 3.8e-115 419.5 306 69.9
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 1.4e-112 411.0 462 48.5
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 2.8e-105 386.7 284 69.4
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 8.3e-102 375.2 266 71.1
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 3.7e-86 323.2 191 78.5
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.9e-83 313.2 241 67.2
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 6.2e-81 305.8 299 52.2
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 5.8e-79 299.3 198 72.7
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.2e-71 275.0 303 53.5
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 4.0e-64 250.0 194 65.5
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 4.5e-63 246.5 184 65.2
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 5.6e-50 203.0 260 45.0
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 5.8e-47 193.0 128 73.4
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 4.3e-42 176.8 121 68.6
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 7.4e-42 176.0 160 59.4
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.1e-40 172.2 159 54.1
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 3.4e-39 167.2 123 63.4
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 5.0e-38 163.3 304 39.1
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 7.4e-34 149.4 236 39.0
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.6e-33 148.3 134 58.2
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 9.1e-32 142.5 87 70.1
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 5.9e-31 139.8 111 60.4
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 2.9e-30 137.5 457 27.8
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 4.6e-28 130.2 261 36.8
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 4.4e-26 123.6 103 58.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.0e-22 112.5 96 57.3
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.5e-21 107.8 77 64.9
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.8e-17 93.6 52 82.7
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.8e-16 91.7 109 46.8
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.1e-16 90.9 53 77.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.3e-14 85.5 47 83.0
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 1.3e-14 85.5 483 24.0
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 3.2e-13 80.9 287 25.4
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 9.4e-13 79.3 61 54.1
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 8.0e-12 76.3 57 56.1
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 8.2e-09 66.2 48 66.7
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 7.0e-08 63.2 39 71.8
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.5e-07 60.5 34 76.5


User provided reference genes

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