Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23004 Nelumbo nucifera HOM05D000260 ORTHO05D009354 4.5e-138 494.6 251 100.0
TAR622G1415 Trochodendron aralioides HOM05D000260 ORTHO05D009354 5.1e-73 278.5 240 58.8
CSS0011015 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D009354 2.6e-69 266.2 223 61.4
Manes.01G192500 Manihot esculenta HOM05D000260 ORTHO05D009354 4.5e-69 265.4 242 55.0
Dinv34186 Davidia involucrata HOM05D000260 ORTHO05D009354 5.8e-69 265.0 242 58.7
Lj6C796T5 Lonicera japonica HOM05D000260 ORTHO05D009354 7.6e-69 264.6 236 58.1
CiPaw.05G141800 Carya illinoinensis HOM05D000260 ORTHO05D009354 1.3e-68 263.8 246 56.1
FAN17G1540 Fragaria x ananassa HOM05D000260 ORTHO05D009354 1.1e-67 260.8 221 56.6
FAN22G1989 Fragaria x ananassa HOM05D000260 ORTHO05D009354 4.2e-67 258.8 234 54.7
Prupe.1G265100 Prunus persica HOM05D000260 ORTHO05D009354 5.5e-67 258.5 240 55.8
FvH4_4g35620 Fragaria vesca HOM05D000260 ORTHO05D009354 1.2e-66 257.3 234 54.3
FAN12G3578 Fragaria x ananassa HOM05D000260 ORTHO05D009354 1.2e-66 257.3 234 54.3
Thecc.02G234700 Theobroma cacao HOM05D000260 ORTHO05D009354 4.6e-66 255.4 240 55.8
Nn3g17100 Nelumbo nucifera HOM05D000260 ORTHO05D009354 1.3e-65 253.8 236 58.5
MD16G1080900 Malus domestica HOM05D000260 ORTHO05D009354 1.8e-65 253.4 240 52.9
FAN07G1036 Fragaria x ananassa HOM05D000260 ORTHO05D009354 1.9e-64 250.0 240 52.1
RcHm_v2.0_Chr4g0445241 Rosa chinensis HOM05D000260 ORTHO05D009354 1.9e-64 250.0 256 50.0
MD13G1081800 Malus domestica HOM05D000260 ORTHO05D009354 3.3e-64 249.2 240 52.5
CANSAT01G2802 Cannabis sativa HOM05D000260 ORTHO05D009354 4.3e-64 248.8 214 56.5
Duzib248G0978 Durio zibethinus HOM05D000260 ORTHO05D009354 3.7e-63 245.7 242 52.5
Sabra10G0029500 Salix brachista HOM05D000260 ORTHO05D009354 8.2e-63 244.6 244 53.3
Potri.010G035300 Populus trichocarpa HOM05D000260 ORTHO05D009354 3.1e-62 242.7 249 53.0
Atru.chr11.1879 Acer truncatum HOM05D000260 ORTHO05D009354 4.1e-62 242.3 222 58.1
Hma1.2p1_1045F.1_g251350 Hydrangea macrophylla HOM05D000260 ORTHO05D009354 9.0e-62 241.1 236 52.1
Cpa.g.sc5.291 Carica papaya HOM05D000260 ORTHO05D009354 1.0e-60 237.7 238 52.5
A07p31300 Brassica napus HOM05D000260 ORTHO05D009354 1.3e-60 237.3 234 53.0
BraA07t30763Z Brassica rapa HOM05D000260 ORTHO05D009354 1.3e-60 237.3 239 51.9
Ciclev10030927m.g Citrus clementina HOM05D000260 ORTHO05D009354 1.7e-60 236.9 248 50.4
THA.LOC104822187 Tarenaya hassleriana HOM05D000260 ORTHO05D009354 3.8e-60 235.7 227 54.2
Oeu028542.1 Olea europaea HOM05D000260 ORTHO05D009354 5.0e-60 235.3 239 50.6
TWI36G1329 Tripterygium wilfordii HOM05D000260 ORTHO05D009354 6.5e-60 235.0 238 51.7
Duzib251G0469 Durio zibethinus HOM05D000260 ORTHO05D009354 8.5e-60 234.6 245 51.4
THA.LOC104822936 Tarenaya hassleriana HOM05D000260 ORTHO05D009354 1.9e-59 233.4 241 52.3
PGSC0003DMG400022596 Solanum tuberosum HOM05D000260 ORTHO05D009354 3.2e-59 232.6 229 50.7
Solyc05g006770.4 Solanum lycopersicum HOM05D000260 ORTHO05D009354 9.4e-59 231.1 229 50.2
BcaB03g15515 Brassica carinata HOM05D000260 ORTHO05D009354 1.2e-58 230.7 226 53.1
Sopen05g002710 Solanum pennellii HOM05D000260 ORTHO05D009354 1.6e-58 230.3 228 50.4
AL22U10070 Arabidopsis lyrata HOM05D000260 ORTHO05D009354 2.1e-58 229.9 240 51.2
Gohir.A03G145500 Gossypium hirsutum HOM05D000260 ORTHO05D009354 2.7e-58 229.6 238 50.0
Gorai.005G189300 Gossypium raimondii HOM05D000260 ORTHO05D009354 3.6e-58 229.2 238 49.6
Aa31LG4G10900 Aethionema arabicum HOM05D000260 ORTHO05D009354 6.1e-58 228.4 237 52.3
BcaC08g45855 Brassica carinata HOM05D000260 ORTHO05D009354 6.1e-58 228.4 224 51.8
BolC6t38763H Brassica oleracea HOM05D000260 ORTHO05D009354 6.1e-58 228.4 224 51.8
Cfa009062 Carpinus fangiana HOM05D000260 ORTHO05D009354 6.1e-58 228.4 223 54.3
MELO3C012049.2 Cucumis melo HOM05D000260 ORTHO05D009354 7.9e-58 228.0 213 53.5
Medtr5g037410 Medicago truncatula HOM05D000260 ORTHO05D009354 7.9e-58 228.0 250 46.8
Gohir.D02G168900 Gossypium hirsutum HOM05D000260 ORTHO05D009354 1.0e-57 227.6 238 49.2
vmacro01221 Vaccinium macrocarpon HOM05D000260 ORTHO05D009354 1.0e-57 227.6 241 50.2
CsaV3_5G032140 Cucumis sativus L. HOM05D000260 ORTHO05D009354 1.8e-57 226.9 211 53.6
Nitab4.5_0001726g0010 Nicotiana tabacum HOM05D000260 ORTHO05D009354 1.8e-57 226.9 225 50.7
AT1G69910 Arabidopsis thaliana HOM05D000260 ORTHO05D009354 2.3e-57 226.5 233 50.2
CAN.G27.35 Capsicum annuum HOM05D000260 ORTHO05D009354 3.0e-57 226.1 226 49.6
Peaxi162Scf00209g00086 Petunia axillaris HOM05D000260 ORTHO05D009354 3.0e-57 226.1 236 49.2
Thhalv10018260m.g Eutrema salsugineum HOM05D000260 ORTHO05D009354 1.1e-56 224.2 236 52.1
COL.COLO4_36214 Corchorus olitorius HOM05D000260 ORTHO05D009354 2.0e-56 223.4 232 51.3
C06p36490 Brassica napus HOM05D000260 ORTHO05D009354 2.5e-56 223.0 199 54.8
Carub.0002s1661 Capsella rubella HOM05D000260 ORTHO05D009354 2.5e-56 223.0 240 50.4
ClCG05G024750 Citrullus lanatus HOM05D000260 ORTHO05D009354 2.5e-56 223.0 213 53.1
Rhsim12G0054300 Rhododendron simsii HOM05D000260 ORTHO05D009354 3.3e-56 222.6 222 50.0
Lalb_Chr09g0326761 Lupinus albus HOM05D000260 ORTHO05D009354 5.7e-56 221.9 240 47.5
PGR102G0158 Punica granatum HOM05D000260 ORTHO05D009354 1.3e-55 220.7 209 54.5
Sp5g25020 Schrenkiella parvula HOM05D000260 ORTHO05D009354 1.3e-55 220.7 232 52.6
SalBow2G1800 Salvia bowleyana HOM05D000260 ORTHO05D009354 2.4e-54 216.5 241 48.5
PSO591G0291 Papaver somniferum HOM05D000260 ORTHO05D009354 3.1e-54 216.1 242 48.3
PSO832G4095 Papaver somniferum HOM05D000260 ORTHO05D009354 5.3e-54 215.3 243 47.7
VMungo1215G0889 Vigna mungo HOM05D000260 ORTHO05D009354 5.3e-54 215.3 212 52.4
DCAR_031067 Daucus carota HOM05D000260 ORTHO05D009354 1.2e-53 214.2 247 46.2
SGA_v2.0_scaffold166G38294 Striga asiatica HOM05D000260 ORTHO05D009354 3.4e-53 212.6 221 51.1
Lj2g0007953 Lotus japonicus HOM05D000260 ORTHO05D009354 4.5e-53 212.2 239 50.2
Sed0018964 Sechium edule HOM05D000260 ORTHO05D009354 1.3e-52 210.7 207 50.2
arahy.Tifrunner.gnm1.ann1.4N5EDQ Arachis hypogaea HOM05D000260 ORTHO05D009354 6.5e-52 208.4 226 52.7
Lsat_1_v5_gn_4_8060 Lactuca sativa HOM05D000260 ORTHO05D009354 6.5e-52 208.4 243 47.3
Aqoxy3G00815 Aquilegia oxysepala HOM05D000260 ORTHO05D009354 1.4e-51 207.2 229 46.7
arahy.Tifrunner.gnm1.ann1.45B2GU Arachis hypogaea HOM05D000260 ORTHO05D009354 1.9e-51 206.8 244 49.6
AUR62026285 Chenopodium quinoa HOM05D000260 ORTHO05D009354 1.9e-51 206.8 199 49.2
QL03p066422 Quercus lobata HOM05D000260 ORTHO05D009354 2.5e-51 206.5 241 46.9
Sc14g0008420 Simmondsia chinensis HOM05D000260 ORTHO05D009354 5.5e-51 205.3 231 48.1
Phvul.002G080400 Phaseolus vulgaris HOM05D000260 ORTHO05D009354 2.7e-50 203.0 213 47.9
TPR.G26736 Trifolium pratense HOM05D000260 ORTHO05D009354 3.6e-50 202.6 199 48.2
Ca_04689_v3 Cicer arietinum L. HOM05D000260 ORTHO05D009354 1.4e-49 200.7 224 46.4
Ah.02g131940 Amaranthus hybridus HOM05D000260 ORTHO05D009354 8.2e-47 191.4 227 45.4
Glyma.02G024400 Glycine max HOM05D000260 ORTHO05D009354 4.1e-46 189.1 214 47.2
CARHR062990 Cardamine hirsuta HOM05D000260 ORTHO05D009354 2.0e-45 186.8 212 47.6
HanXRQChr17g0570431 Helianthus annuus HOM05D000260 ORTHO05D009354 3.1e-38 162.9 214 41.6
Oeu013607.1 Olea europaea HOM05D000260 ORTHO05D009354 2.7e-34 149.8 171 49.7
ATR0001G030 Amborella trichopoda HOM05D000260 ORTHO05D009354 1.5e-24 117.5 230 38.3
PSO161G0021 Papaver somniferum HOM05D000260 ORTHO05D009354 1.2e-21 107.8 209 37.8
PSO478G5296 Papaver somniferum HOM05D000260 ORTHO05D009354 1.3e-20 104.4 209 37.3
AUR62026478 Chenopodium quinoa HOM05D000260 ORTHO05D009354 2.3e-20 103.6 91 48.4
Nitab4.5_0000408g0110 Nicotiana tabacum HOM05D000260 ORTHO05D009354 5.6e-19 99.0 81 50.6
Psat2g115920 Pisum sativum HOM05D000260 ORTHO05D009354 2.7e-13 80.1 69 52.2
SEGI_11217 Sequoiadendron giganteum HOM05D000260 ORTHO05D000318 8.0e-10 68.6 216 25.9
Actinidia38593 Actinidia chinensis HOM05D050653 ORTHO05D009354 2.3e-09 67.0 49 55.1
ATR0665G274 Amborella trichopoda HOM05D000260 ORTHO05D009354 8.9e-09 65.1 238 31.1
MBI01_g01224_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D009354 2.6e-08 63.5 236 28.4
Hma1.2p1_0289F.1_g114220 Hydrangea macrophylla HOM05D000260 ORTHO05D009354 3.7e-07 59.7 216 25.0
arahy.Tifrunner.gnm1.ann1.89PCLJ Arachis hypogaea HOM05D000031 ORTHO05D001864 9.2e-06 55.1 230 26.1
SEGI_32585 Sequoiadendron giganteum HOM05D000260 ORTHO05D000318 9.2e-06 55.1 228 23.7


User provided reference genes

Program Settings