Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.9e-162 575.9 302 100.0
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 1.7e-102 376.7 291 71.5
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 7.2e-90 334.7 282 66.0
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.4e-88 330.5 286 62.2
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 8.8e-88 327.8 242 69.4
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.7e-87 325.1 233 69.5
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.2e-86 323.2 233 70.4
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 2.8e-86 322.8 297 60.6
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 4.9e-86 322.0 263 64.3
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 8.3e-86 321.2 290 61.0
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.8e-85 320.1 295 60.0
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.4e-85 319.7 293 60.4
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 4.1e-85 318.9 251 64.5
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 9.1e-85 317.8 263 65.0
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.7e-84 316.2 284 63.0
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 4.5e-84 315.5 241 68.9
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 5.9e-84 315.1 275 63.6
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.9e-83 312.8 283 60.4
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 5.0e-83 312.0 286 62.9
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 5.0e-83 312.0 280 60.0
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.9e-82 310.1 265 62.3
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 3.3e-82 309.3 233 67.4
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 4.2e-82 308.9 321 55.8
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 7.2e-82 308.1 231 68.0
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 9.5e-82 307.8 289 60.9
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 9.5e-82 307.8 299 58.2
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 2.8e-81 306.2 257 64.2
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.0e-80 304.3 229 65.9
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-80 304.3 284 58.5
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.4e-80 303.9 229 68.1
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.4e-80 303.9 269 61.0
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 4.0e-80 302.4 233 65.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 4.0e-80 302.4 284 59.2
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 4.4e-79 298.9 228 66.2
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.4e-79 298.9 283 59.0
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 5.7e-79 298.5 293 56.7
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.5e-79 298.1 283 58.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.3e-78 297.4 227 67.4
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.7e-78 297.0 232 64.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.7e-78 297.0 236 65.7
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.7e-78 297.0 232 65.1
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.7e-78 297.0 230 66.5
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.2e-78 296.6 261 61.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 2.9e-78 296.2 268 61.2
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.7e-78 295.8 282 58.5
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 6.4e-78 295.0 234 65.8
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.4e-78 295.0 230 66.5
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 1.1e-77 294.3 272 60.7
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.4e-77 293.9 259 61.4
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 2.4e-77 293.1 312 54.2
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 5.4e-77 292.0 230 65.2
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 2.0e-76 290.0 277 57.4
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 2.0e-76 290.0 234 66.2
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.5e-76 289.3 230 63.5
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 4.6e-76 288.9 227 65.2
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.8e-76 288.1 229 62.4
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.0e-75 287.7 287 56.1
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.3e-75 287.3 274 56.6
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.3e-75 287.3 294 55.1
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.7e-75 287.0 230 65.2
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.3e-75 286.6 276 56.5
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 2.9e-75 286.2 257 59.5
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 3.9e-75 285.8 238 62.6
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.9e-75 285.8 229 65.1
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 5.0e-75 285.4 284 54.6
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 8.6e-75 284.6 298 54.4
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 8.6e-75 284.6 229 65.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.5e-74 283.9 229 64.6
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 2.5e-74 283.1 259 59.5
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 3.3e-74 282.7 274 55.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 3.3e-74 282.7 258 59.3
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 3.3e-74 282.7 260 58.8
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 4.3e-74 282.3 266 57.9
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 5.6e-74 282.0 226 64.2
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 7.3e-74 281.6 283 54.1
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 9.5e-74 281.2 264 56.1
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 9.5e-74 281.2 264 58.7
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.2e-73 280.8 227 62.6
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.2e-73 280.8 301 53.2
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 1.6e-73 280.4 289 53.6
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.1e-73 280.0 270 56.3
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.1e-73 280.0 229 63.8
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 3.6e-73 279.3 274 55.5
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.6e-73 279.3 234 62.0
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 3.6e-73 279.3 267 56.2
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 4.7e-73 278.9 280 54.6
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 6.2e-73 278.5 245 58.0
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 6.2e-73 278.5 257 57.6
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 6.2e-73 278.5 241 59.8
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 1.0e-72 277.7 280 54.3
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.4e-72 277.3 231 61.0
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-72 276.2 263 57.0
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 3.1e-72 276.2 229 62.0
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 5.2e-72 275.4 226 63.3
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 5.2e-72 275.4 272 55.5
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 6.8e-72 275.0 275 53.8
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.5e-71 273.9 279 55.9
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 4.4e-71 272.3 297 51.2
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 4.4e-71 272.3 232 60.8
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 5.8e-71 271.9 292 52.7
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.4e-70 268.5 271 55.7
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 6.4e-70 268.5 269 58.4
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.4e-69 267.3 259 57.1
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.4e-69 267.3 308 50.6
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.4e-69 266.5 286 51.7
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.6e-68 263.8 201 68.2
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.6e-68 263.8 212 64.2
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.5e-66 256.5 215 62.8
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 4.3e-66 255.8 282 53.5
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 9.5e-66 254.6 231 56.7
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 8.1e-65 251.5 258 54.7
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 9.8e-63 244.6 199 65.8
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.3e-62 244.2 195 62.1
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.7e-62 242.7 280 50.0
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.2e-61 239.6 270 53.0
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.4e-61 238.8 188 64.4
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.6e-60 235.7 260 51.2
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.3e-59 234.2 296 50.3
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.0e-59 233.0 326 44.8
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 8.1e-57 224.9 296 45.3
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 4.0e-56 222.6 219 53.4
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 6.8e-56 221.9 228 51.3
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 8.9e-56 221.5 163 68.1
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.5e-55 220.7 231 50.6
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 5.8e-55 218.8 168 64.3
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 1.3e-54 217.6 143 75.5
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 2.9e-54 216.5 151 71.5
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 4.1e-53 212.6 144 73.6
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 9.2e-53 211.5 152 70.4
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.1e-52 210.3 229 51.1
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 3.9e-51 206.1 233 51.5
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.6e-51 205.3 146 70.5
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.6e-44 182.6 161 58.4
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-42 177.9 229 47.2
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 4.0e-40 169.5 223 42.2
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 6.0e-36 155.6 96 79.2
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 7.9e-36 155.2 166 47.6
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.7e-35 154.1 129 59.7
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 2.3e-35 153.7 136 56.6
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.5e-34 151.0 171 48.5
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.8e-33 146.7 202 46.5
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 2.3e-27 127.1 97 69.1
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 3.9e-27 126.3 213 38.0
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.0e-24 115.2 142 47.9
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 4.9e-22 109.4 241 34.4
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 1.1e-21 108.2 239 33.1
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.3e-19 101.3 91 57.1
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 5.1e-19 99.4 93 57.0
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 7.4e-18 95.5 80 61.2
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.0e-11 75.1 109 44.0
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 4.1e-08 63.2 95 45.3


User provided reference genes

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