Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 7.2e-50 200.3 102 100.0
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.2e-23 113.2 103 65.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.4e-21 104.4 102 56.9
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.1e-18 96.7 99 61.6
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.5e-18 96.3 99 58.6
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.6e-17 91.7 93 60.2
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.3e-16 89.0 101 51.5
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.2e-16 87.8 84 59.5
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 5.8e-15 84.3 103 49.5
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 9.8e-15 83.6 98 50.0
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.3e-14 83.2 90 51.1
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.2e-14 82.4 99 53.5
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.7e-14 81.6 98 49.0
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 3.7e-14 81.6 99 50.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 3.7e-14 81.6 102 48.0
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.4e-14 80.9 104 51.9
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.1e-13 80.1 98 51.0
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.8e-13 79.3 93 50.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.2e-13 77.0 101 48.5
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 9.2e-13 77.0 55 67.3
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.2e-12 76.6 101 49.5
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-12 76.3 101 48.5
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.7e-12 75.5 97 47.4
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 3.5e-12 75.1 99 49.5
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 4.6e-12 74.7 91 50.5
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 7.8e-12 73.9 105 44.8
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.0e-11 73.6 91 51.6
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 1.7e-11 72.8 99 48.5
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.7e-11 72.8 78 53.8
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.3e-11 72.4 101 43.6
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 3.0e-11 72.0 68 55.9
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 3.9e-11 71.6 90 51.1
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 6.6e-11 70.9 107 47.7
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 6.6e-11 70.9 62 59.7
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.6e-11 70.9 98 41.8
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 8.6e-11 70.5 81 50.6
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 8.6e-11 70.5 93 46.2
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.1e-10 70.1 63 58.7
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.9e-10 69.3 106 42.5
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 2.5e-10 68.9 48 68.8
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.5e-10 68.9 98 45.9
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.3e-10 68.6 93 51.6
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 3.3e-10 68.6 102 42.2
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 3.3e-10 68.6 87 48.3
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.3e-10 68.6 36 86.1
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.3e-10 68.2 93 46.2
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 5.6e-10 67.8 84 50.0
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 7.3e-10 67.4 96 45.8
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 7.3e-10 67.4 50 66.0
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 7.3e-10 67.4 94 45.7
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 9.5e-10 67.0 77 50.6
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 9.5e-10 67.0 96 44.8
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.1e-09 65.9 93 46.2
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.1e-09 65.9 102 41.2
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.1e-09 65.9 100 42.0
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 3.6e-09 65.1 115 39.1
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.6e-09 65.1 107 43.0
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.6e-09 65.1 108 41.7
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.6e-09 65.1 105 42.9
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 6.2e-09 64.3 47 70.2
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 8.0e-09 63.9 42 78.6
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 8.0e-09 63.9 38 78.9
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.0e-09 63.9 38 81.6
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 8.0e-09 63.9 71 53.5
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 8.0e-09 63.9 65 47.7
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.1e-08 63.5 63 54.0
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.1e-08 63.5 64 53.1
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 1.1e-08 63.5 99 43.4
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 1.4e-08 63.2 98 43.9
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.4e-08 63.2 51 62.7
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.4e-08 63.2 99 44.4
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.8e-08 62.8 38 76.3
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.8e-08 62.8 51 62.7
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.8e-08 62.8 97 44.3
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.3e-08 62.4 36 80.6
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 2.3e-08 62.4 84 42.9
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 3.1e-08 62.0 91 45.1
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 5.2e-08 61.2 33 84.8
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.2e-08 61.2 38 76.3
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 5.2e-08 61.2 38 76.3
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 5.2e-08 61.2 81 49.4
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 6.8e-08 60.8 85 44.7
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 6.8e-08 60.8 101 42.6
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 6.8e-08 60.8 99 42.4
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 8.9e-08 60.5 50 60.0
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 8.9e-08 60.5 51 62.7
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 1.2e-07 60.1 101 42.6
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 1.2e-07 60.1 87 44.8
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.5e-07 59.7 102 41.2
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.0e-07 59.3 93 39.8
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 2.0e-07 59.3 55 52.7
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 3.4e-07 58.5 98 38.8
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 3.4e-07 58.5 94 43.6
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 3.4e-07 58.5 88 46.6
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 4.4e-07 58.2 50 56.0
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 4.4e-07 58.2 46 65.2
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 4.4e-07 58.2 97 39.2
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 5.8e-07 57.8 47 61.7
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 5.8e-07 57.8 97 43.3
Sopen02g032220 Solanum pennellii HOM05D021089 ORTHO05D022961 7.5e-07 57.4 68 45.6
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 7.5e-07 57.4 64 48.4
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 9.8e-07 57.0 82 42.7
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 9.8e-07 57.0 50 56.0
PSO591G0153 Papaver somniferum HOM05D044922 ORTHO05D050178 9.8e-07 57.0 64 51.6
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 9.8e-07 57.0 37 70.3
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 9.8e-07 57.0 37 70.3
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.3e-06 56.6 87 42.5
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.3e-06 56.6 61 52.5
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.3e-06 56.6 90 41.1
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.3e-06 56.6 91 42.9
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.7e-06 56.2 34 76.5
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 1.7e-06 56.2 65 52.3
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 1.7e-06 56.2 66 51.5
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 2.2e-06 55.8 59 45.8
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 2.9e-06 55.5 63 50.8
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 2.9e-06 55.5 112 42.9
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.9e-06 55.5 96 42.7
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.9e-06 55.5 93 39.8
A02p16280 Brassica napus HOM05D010176 ORTHO05D012455 3.7e-06 55.1 63 50.8
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 3.7e-06 55.1 96 42.7
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 3.7e-06 55.1 50 58.0
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 4.9e-06 54.7 98 35.7
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 4.9e-06 54.7 94 41.5
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 4.9e-06 54.7 96 41.7
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 6.4e-06 54.3 77 45.5
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.4e-06 54.3 96 41.7
Nitab4.5_0002265g0020 Nicotiana tabacum HOM05D021089 ORTHO05D022961 6.4e-06 54.3 56 50.0
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 6.4e-06 54.3 47 59.6
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 8.3e-06 53.9 66 48.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 8.3e-06 53.9 98 39.8
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 8.3e-06 53.9 29 82.8
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 8.3e-06 53.9 50 56.0


User provided reference genes

Program Settings