Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.0e-114 416.8 216 100.0
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 1.5e-68 263.5 228 64.9
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 3.3e-60 235.7 230 57.8
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 7.3e-60 234.6 187 66.8
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 2.8e-59 232.6 178 68.5
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 8.1e-59 231.1 202 61.4
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 1.8e-58 229.9 180 67.2
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.6e-57 226.1 189 61.4
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.7e-56 223.4 209 59.3
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.1e-55 220.7 210 57.1
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 1.4e-55 220.3 195 61.5
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 2.4e-55 219.5 217 58.5
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 4.1e-55 218.8 225 56.9
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 5.4e-55 218.4 208 58.2
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 5.4e-55 218.4 180 61.7
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.2e-54 217.2 180 61.7
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 4.6e-54 215.3 174 63.2
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 1.0e-53 214.2 209 56.5
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.0e-53 214.2 187 61.0
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 5.1e-53 211.8 216 56.9
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 5.1e-53 211.8 180 62.2
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 6.6e-53 211.5 177 62.1
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 8.6e-53 211.1 170 65.3
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 1.5e-52 210.3 167 65.3
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 4.3e-52 208.8 212 56.6
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 5.6e-52 208.4 164 65.2
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 3.1e-50 202.6 176 60.2
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.1e-50 202.6 164 64.0
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.1e-50 202.6 190 57.9
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 6.8e-50 201.4 190 57.9
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 7.6e-49 198.0 206 54.9
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 9.9e-49 197.6 176 58.5
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 3.8e-48 195.7 217 50.7
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 3.8e-48 195.7 220 51.4
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 4.9e-48 195.3 222 49.5
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 4.9e-48 195.3 197 52.8
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.1e-47 194.1 228 49.6
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.4e-47 193.7 173 59.0
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.4e-47 193.7 173 59.0
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.4e-47 193.0 173 59.0
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.4e-47 193.0 173 59.0
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.4e-47 193.0 217 50.7
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 3.2e-47 192.6 177 54.8
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 4.1e-47 192.2 173 59.0
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 7.1e-47 191.4 216 51.4
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.2e-46 190.7 218 51.4
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 1.2e-46 190.7 218 50.5
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 2.7e-46 189.5 201 54.2
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.7e-46 189.5 211 53.1
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 4.6e-46 188.7 196 51.0
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 7.8e-46 188.0 174 60.9
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 1.3e-45 187.2 189 52.4
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 2.3e-45 186.4 225 48.0
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 3.0e-45 186.0 195 52.8
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 1.9e-44 183.3 225 48.0
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.5e-44 183.0 187 54.0
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 7.3e-44 181.4 176 55.1
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 7.3e-44 181.4 162 57.4
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 7.3e-44 181.4 179 56.4
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.2e-43 180.6 199 49.2
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 2.8e-43 179.5 183 57.4
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 6.2e-43 178.3 184 50.0
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 8.1e-43 177.9 219 48.4
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.4e-42 177.2 181 54.1
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 5.2e-42 175.3 210 46.2
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 6.9e-42 174.9 166 58.4
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 6.9e-42 174.9 207 50.2
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 8.9e-42 174.5 171 55.0
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 1.3e-40 170.6 175 51.4
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 2.2e-40 169.9 217 49.3
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 3.8e-40 169.1 177 55.4
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 4.9e-40 168.7 138 63.0
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.4e-39 167.2 217 47.5
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 1.9e-39 166.8 165 54.5
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.9e-39 166.8 185 52.4
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 3.2e-39 166.0 226 44.7
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 4.2e-39 165.6 135 63.7
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 9.3e-39 164.5 129 65.1
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.6e-38 163.7 216 46.3
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.6e-38 163.7 178 49.4
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.0e-37 161.0 260 42.7
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 8.7e-37 157.9 218 46.3
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 2.5e-36 156.4 309 38.8
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 3.3e-36 156.0 215 44.2
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.1e-34 151.0 188 45.7
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 1.4e-34 150.6 141 61.7
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.1e-34 149.4 167 49.1
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 3.1e-34 149.4 169 50.9
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.2e-33 147.5 137 55.5
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 1.5e-33 147.1 179 45.8
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.3e-32 144.1 167 48.5
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 8.4e-32 141.4 156 48.1
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.9e-31 140.2 154 51.9
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 4.2e-31 139.0 132 52.3
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.6e-30 137.1 188 42.6
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 3.9e-29 132.5 167 46.7
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 3.6e-27 125.9 208 38.9
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.8e-26 123.6 142 46.5
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.1e-26 122.9 130 51.5
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 4.0e-26 122.5 149 49.7
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 5.8e-25 118.6 199 40.2
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 4.6e-22 109.0 102 58.8
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.1e-20 104.4 156 39.1
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 9.0e-18 94.7 165 35.8
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 6.7e-13 78.6 75 50.7
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 6.7e-13 78.6 75 50.7
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.8e-11 73.2 73 54.8
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 4.8e-11 72.4 155 34.2
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.8e-10 70.5 135 35.6
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 2.0e-09 67.0 123 30.9
Sabra08G0145200 Salix brachista HOM05D007009 ORTHO05D008451 1.6e-06 57.4 67 56.7
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 2.1e-06 57.0 77 44.2
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 2.7e-06 56.6 98 35.7
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 4.6e-06 55.8 38 65.8


User provided reference genes

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