Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1788.5 874 100.0
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1430.6 874 80.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1399.4 874 79.2
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1305.8 873 74.9
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1305.4 876 74.1
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1287.7 871 73.8
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1282.7 850 74.7
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1275.0 859 73.5
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1274.2 873 72.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1263.1 884 71.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1260.4 868 72.6
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1259.6 919 70.1
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1256.1 905 70.3
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1256.1 874 72.8
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 869 73.4
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1250.0 867 72.8
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1248.4 862 72.3
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1245.7 879 71.1
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1240.7 859 72.1
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1240.7 872 72.1
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 873 71.8
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 865 73.2
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1238.8 873 71.6
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1238.0 873 71.8
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1233.4 836 73.1
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1229.5 877 70.0
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1229.2 901 68.0
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 865 71.6
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1226.5 874 70.7
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1214.5 860 71.4
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1213.0 898 69.3
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1211.8 876 69.6
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 867 70.6
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1207.2 882 69.2
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1206.4 880 69.8
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1204.1 859 70.0
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1203.0 891 68.6
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1200.7 887 69.1
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1199.9 859 69.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1198.7 871 69.1
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1196.4 856 69.4
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 880 68.8
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 869 69.0
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1191.0 871 69.6
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1189.9 896 68.0
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1189.5 863 69.1
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1188.3 891 68.0
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1187.2 874 68.2
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1186.4 882 68.9
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1184.1 866 68.6
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1182.5 862 68.4
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1180.6 875 68.0
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1180.6 861 69.7
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1179.5 856 70.2
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1178.7 914 66.4
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1178.3 900 66.9
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1176.4 865 70.2
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1176.0 877 68.6
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 874 68.4
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1173.7 862 69.5
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1173.7 868 69.0
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1173.3 874 68.5
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 897 66.7
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 891 67.5
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 906 66.9
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1171.0 880 69.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1170.2 897 67.8
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1168.7 915 65.8
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1168.7 901 66.1
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1168.3 877 68.4
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1164.8 876 69.2
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 901 65.7
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1164.1 867 68.6
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1161.7 877 68.3
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1160.6 909 66.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1160.2 868 69.7
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1159.4 866 69.7
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1158.7 866 70.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1157.5 890 66.4
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 940 63.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 886 64.2
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1130.2 863 68.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 871 67.3
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 865 68.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1125.2 877 66.2
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1123.2 889 65.9
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 885 65.3
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 866 67.1
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1119.8 876 66.0
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 894 65.0
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 871 65.8
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1115.9 871 65.9
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1114.4 875 65.0
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 872 66.1
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1109.7 922 63.6
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1109.4 865 67.2
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1104.4 601 90.8
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1100.1 860 66.3
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1100.1 878 65.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1092.0 761 70.8
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 899 63.5
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1088.2 877 64.3
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1082.4 893 63.4
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1077.8 861 65.0
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 897 63.7
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.8e-311 1072.4 880 63.5
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 2.0e-310 1068.9 882 64.2
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 5.9e-310 1067.4 893 61.9
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 8.5e-309 1063.5 941 58.8
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 1.5e-308 1062.8 881 62.8
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-307 1059.3 881 62.7
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 8.0e-307 1057.0 874 62.5
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.4e-306 1056.2 884 62.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 8.8e-306 1053.5 868 62.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.5e-305 1052.7 963 59.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 2.0e-305 1052.4 891 62.1
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 2.6e-305 1052.0 882 62.4
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 8.3e-304 1047.0 837 65.0
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-299 1033.1 819 64.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.4e-297 1025.0 879 61.0
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 8.3e-296 1020.4 801 65.7
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 8.3e-296 1020.4 836 64.6
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.9e-293 1011.9 822 62.2
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 2.5e-292 1008.8 898 61.4
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 7.3e-292 1007.3 954 56.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 3.0e-290 1001.9 861 60.5
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.7e-286 988.8 838 61.0
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 5.0e-285 984.6 834 60.4
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.6e-281 972.2 895 57.5
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.4e-280 967.6 893 57.1
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.0e-277 960.3 588 78.6
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.0e-274 948.3 886 55.4
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 5.2e-274 948.0 888 57.5
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.2e-271 938.7 920 54.8
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 6.0e-270 934.5 876 55.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.6e-261 904.4 897 52.5
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.0e-257 892.9 907 55.3
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 2.8e-251 872.5 855 55.7
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.3e-245 853.6 865 53.9
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.3e-244 849.0 622 67.0
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 3.5e-238 828.9 804 54.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 9.0e-226 787.7 566 71.0
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.3e-221 773.9 868 47.8
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 6.5e-216 755.0 570 63.3
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.2e-215 752.7 859 46.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.2e-208 729.9 864 45.6
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 4.8e-195 685.6 635 58.3
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 6.3e-195 685.3 613 54.0
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.9e-191 673.7 635 57.2
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.3e-175 619.8 517 61.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.3e-175 619.4 891 41.9
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.4e-170 604.4 578 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.4e-147 525.8 568 47.5
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.4e-138 497.3 450 58.0
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.9e-121 439.1 512 49.0
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.3e-120 437.6 474 50.0
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 4.8e-118 429.9 618 39.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-109 401.4 401 55.9
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 2.0e-100 371.3 698 33.4
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 6.3e-94 349.7 264 63.6
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.5e-92 344.0 222 73.4
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.7e-76 291.2 264 56.1
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 6.3e-70 270.0 175 70.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 6.6e-67 260.0 520 29.6
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 1.4e-61 242.3 504 29.8
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.3e-59 235.0 156 73.1
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 9.5e-34 149.8 190 47.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.3e-30 139.4 215 41.4
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 3.2e-21 108.2 69 73.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.2e-20 106.3 74 71.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.0e-19 103.2 71 64.8
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.1e-17 93.6 119 49.6
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 1.9e-13 82.4 165 34.5
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 6.7e-11 73.9 74 54.1


User provided reference genes

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