Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22868 Nelumbo nucifera HOM05D002427 ORTHO05D002818 1.5e-11 71.2 31 100.0
Nn4g23073 Nelumbo nucifera HOM05D002427 ORTHO05D002818 3.2e-09 63.5 31 90.3
ATR1120G025 Amborella trichopoda HOM05D002427 ORTHO05D002818 7.1e-09 62.4 31 87.1
Mapoly0004s0135 Marchantia polymorpha HOM05D002427 ORTHO05D002818 9.3e-09 62.0 31 87.1
Aqoxy3G03307 Aquilegia oxysepala HOM05D002427 ORTHO05D002818 1.2e-08 61.6 31 87.1
Ah.12g065420 Amaranthus hybridus HOM05D002427 ORTHO05D002818 1.6e-08 61.2 31 83.9
EL10Ac2g02947 Beta vulgaris HOM05D002427 ORTHO05D002818 1.6e-08 61.2 31 83.9
Atru.chr8.2580 Acer truncatum HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
arahy.Tifrunner.gnm1.ann1.867A3R Arachis hypogaea HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
arahy.Tifrunner.gnm1.ann1.ZYPR1Z Arachis hypogaea HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Cfa007523 Carpinus fangiana HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
CiPaw.04G018900 Carya illinoinensis HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
ClCG09G018370 Citrullus lanatus HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Ciclev10011231m.g Citrus clementina HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Haze_14565 Corylus avellana HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
MELO3C021977.2 Cucumis melo HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
CsaV3_5G037910 Cucumis sativus L. HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Dinv33734 Davidia involucrata HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Duzib147G1704 Durio zibethinus HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Eucgr.J01223 Eucalyptus grandis HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Glyma.09G258100 Glycine max HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Glyma.18G234533 Glycine max HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Lj1g0012635 Lotus japonicus HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Lalb_Chr10g0093461 Lupinus albus HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
PGR083G2781 Punica granatum HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
QL02p080902 Quercus lobata HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
RhsimUnG0056200 Rhododendron simsii HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
RhsimUnG0199500 Rhododendron simsii HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Sed0006106 Sechium edule HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Sc14g0006010 Simmondsia chinensis HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Thecc.04G076800 Theobroma cacao HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
vmacro05727 Vaccinium macrocarpon HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
Zm00001eb377210 Zea mays HOM05D002427 ORTHO05D002818 4.6e-08 59.7 31 83.9
CANSAT64G2777 Cannabis sativa HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 83.9
Cpa.g.sc14.31 Carica papaya HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 83.9
AUR62031626 Chenopodium quinoa HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
AUR62038862 Chenopodium quinoa HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
Ca_03965_v3 Cicer arietinum L. HOM05D002216 ORTHO05D002818 6.0e-08 59.3 31 80.6
Hma1.2p1_0627F.1_g191660 Hydrangea macrophylla HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
Manes.17G023200 Manihot esculenta HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 83.9
Medtr7g009740 Medicago truncatula HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
Phvul.008G061200 Phaseolus vulgaris HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
Psat3g196200 Pisum sativum HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
TPR.G4284 Trifolium pratense HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
TWI32G1331 Tripterygium wilfordii HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
GSVIVG01011357001 Vitis vinifera HOM05D002427 ORTHO05D002818 6.0e-08 59.3 31 80.6
MBI04_g05744_MAGBIO Magnolia biondii HOM05D002427 ORTHO05D002818 7.9e-08 58.9 31 83.9
Pp3c1_4340 Physcomitrium patens HOM05D002427 ORTHO05D002818 7.9e-08 58.9 31 80.6
TAR622G1056 Trochodendron aralioides HOM05D002427 ORTHO05D002818 7.9e-08 58.9 31 80.6
CBR_g32286 Chara braunii HOM05D002427 ORTHO05D002818 1.0e-07 58.5 31 77.4
SHI36223 Sapria himalayana HOM05D002427 ORTHO05D002818 1.0e-07 58.5 31 83.9
AL7G50230 Arabidopsis lyrata HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
AT5G39900 Arabidopsis thaliana HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
BcaB02g07962 Brassica carinata HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
BcaC08g44436 Brassica carinata HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
A07p20130 Brassica napus HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
C06p18790 Brassica napus HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
BolC6t37084H Brassica oleracea HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
BraA07t29712Z Brassica rapa HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
Carub.0007s3582 Capsella rubella HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
CARHR262280 Cardamine hirsuta HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
Thhalv10027676m.g Eutrema salsugineum HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
RhsimUnG0056000 Rhododendron simsii HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
Sp7g02140 Schrenkiella parvula HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
unitig_899.g15509 Utricularia gibba HOM05D002427 ORTHO05D002818 1.3e-07 58.2 31 80.6
Actinidia06079 Actinidia chinensis HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
Aa31LG9G1680 Aethionema arabicum HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
AagrBONN_evm.TU.Sc2ySwM_362.744 Anthoceros agrestis HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
MSTRG.23955 Avicennia marina HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
CDE04G1124 Ceratophyllum demersum HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
COL.COLO4_08184 Corchorus olitorius HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
Lsat_1_v5_gn_4_177001 Lactuca sativa HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 77.4
Os06g0144800 Oryza sativa ssp. japonica HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
Potri.017G079800 Populus trichocarpa HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
Sabra17G0071400 Salix brachista HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
SalBow1G5571 Salvia bowleyana HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
Solyc03g058880.4 Solanum lycopersicum HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
Sopen03g012730 Solanum pennellii HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
PGSC0003DMG400013207 Solanum tuberosum HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
SGA_v2.0_scaffold205G41766 Striga asiatica HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
THA.LOC104805446 Tarenaya hassleriana HOM05D002427 ORTHO05D002818 1.8e-07 57.8 31 80.6
FvH4_6g49130 Fragaria vesca HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
FAN05G5119 Fragaria x ananassa HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
FAN09G1930 Fragaria x ananassa HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
FAN09G4543 Fragaria x ananassa HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
FAN14G0174 Fragaria x ananassa HOM05D002216 ORTHO05D002818 2.3e-07 57.4 31 80.6
MD09G1048400 Malus domestica HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
Prupe.3G270700 Prunus persica HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
RcHm_v2.0_Chr2g0169001 Rosa chinensis HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 80.6
SMO356G0079 Selaginella moellendorffii HOM05D002427 ORTHO05D002818 2.3e-07 57.4 31 77.4
PSO591G0368 Papaver somniferum HOM05D002427 ORTHO05D002818 3.9e-07 56.6 31 77.4
PSO832G3780 Papaver somniferum HOM05D002427 ORTHO05D002818 3.9e-07 56.6 31 77.4
Migut.H00899 Erythranthe guttata HOM05D002427 ORTHO05D002818 5.1e-07 56.2 31 77.4
MD17G1048500 Malus domestica HOM05D002427 ORTHO05D002818 5.1e-07 56.2 31 80.6
ECA232G2441 Erigeron canadensis HOM05D002427 ORTHO05D002818 6.7e-07 55.8 31 74.2
HanXRQChr09g0265491 Helianthus annuus HOM05D002427 ORTHO05D002818 6.7e-07 55.8 31 74.2
Lj7A399T57 Lonicera japonica HOM05D002427 ORTHO05D002818 6.7e-07 55.8 31 74.2
SEGI_24970 Sequoiadendron giganteum HOM05D002427 ORTHO05D002818 1.1e-06 55.1 31 77.4
Cc07_g03130 Coffea canephora HOM05D002427 ORTHO05D002818 1.5e-06 54.7 31 77.4
Gohir.A09G022600 Gossypium hirsutum HOM05D002427 ORTHO05D002818 1.5e-06 54.7 31 77.4
Gohir.D09G021900 Gossypium hirsutum HOM05D002427 ORTHO05D002818 1.5e-06 54.7 31 77.4
Gorai.006G025800 Gossypium raimondii HOM05D002427 ORTHO05D002818 1.5e-06 54.7 31 77.4
SGA_v2.0_scaffold236G43780 Striga asiatica HOM05D002427 ORTHO05D002818 5.6e-06 52.8 31 71.0
MCO13G039 Micromonas commoda HOM05D002427 ORTHO05D002818 9.6e-06 52.0 31 67.7


User provided reference genes

Program Settings