Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22840 Nelumbo nucifera HOM05D007441 ORTHO05D009501 6.8e-102 374.0 190 100.0
FvH4_5g05090 Fragaria vesca HOM05D007441 ORTHO05D009501 1.1e-46 190.7 177 58.2
FAN04G2715 Fragaria x ananassa HOM05D007441 ORTHO05D009501 3.1e-46 189.1 177 58.2
FAN18G4363 Fragaria x ananassa HOM05D007441 ORTHO05D009501 5.3e-46 188.3 177 57.6
Prupe.5G176500 Prunus persica HOM05D007441 ORTHO05D009501 5.3e-46 188.3 168 59.5
GSVIVG01007790001 Vitis vinifera HOM05D007441 ORTHO05D009501 5.3e-46 188.3 174 56.3
FAN13G3077 Fragaria x ananassa HOM05D007441 ORTHO05D009501 9.0e-46 187.6 177 57.1
Hma1.2p1_0176F.1_g077710 Hydrangea macrophylla HOM05D007441 ORTHO05D009501 9.9e-45 184.1 181 55.2
RcHm_v2.0_Chr7g0193911 Rosa chinensis HOM05D007441 ORTHO05D009501 9.9e-45 184.1 168 56.5
Sc04g0001930 Simmondsia chinensis HOM05D007441 ORTHO05D009501 1.3e-44 183.7 180 52.8
Duzib084G0400 Durio zibethinus HOM05D007441 ORTHO05D009501 1.7e-44 183.3 177 52.5
QL10p013655 Quercus lobata HOM05D007441 ORTHO05D009501 1.7e-44 183.3 139 64.7
Glyma.17G091300 Glycine max HOM05D007441 ORTHO05D009501 2.9e-44 182.6 168 53.6
Lj4g0018861 Lotus japonicus HOM05D007441 ORTHO05D009501 3.8e-44 182.2 144 62.5
TWI15G0162 Tripterygium wilfordii HOM05D007441 ORTHO05D009501 8.4e-44 181.0 179 54.7
CiPaw.11G029400 Carya illinoinensis HOM05D007441 ORTHO05D009501 1.4e-43 180.3 178 55.1
MD14G1183800 Malus domestica HOM05D007441 ORTHO05D009501 1.4e-43 180.3 139 66.2
Sabra12G0056200 Salix brachista HOM05D007441 ORTHO05D009501 5.5e-43 178.3 161 58.4
Dinv20676 Davidia involucrata HOM05D007441 ORTHO05D009501 1.6e-42 176.8 179 54.2
Lsat_1_v5_gn_1_26521 Lactuca sativa HOM05D007441 ORTHO05D009501 1.6e-42 176.8 166 55.4
Thecc.03G008500 Theobroma cacao HOM05D007441 ORTHO05D009501 1.6e-42 176.8 174 52.9
TAR622G1175 Trochodendron aralioides HOM05D007441 ORTHO05D009501 2.7e-42 176.0 180 56.1
Potri.012G078400 Populus trichocarpa HOM05D007441 ORTHO05D009501 3.5e-42 175.6 162 55.6
Cpa.g.sc124.33 Carica papaya HOM05D007441 ORTHO05D009501 7.9e-42 174.5 178 51.7
Lj9A451T94 Lonicera japonica HOM05D007441 ORTHO05D009501 1.3e-41 173.7 181 50.8
Duzib205G0170 Durio zibethinus HOM05D007441 ORTHO05D009501 1.8e-41 173.3 173 52.6
Manes.06G102900 Manihot esculenta HOM05D007441 ORTHO05D009501 2.3e-41 172.9 139 59.7
VMungo1215G1307 Vigna mungo HOM05D007441 ORTHO05D009501 5.1e-41 171.8 150 57.3
PGR044G0794 Punica granatum HOM05D007441 ORTHO05D009501 6.7e-41 171.4 174 51.1
Ciclev10022460m.g Citrus clementina HOM05D007441 ORTHO05D009501 8.7e-41 171.0 139 64.0
Lalb_Chr07g0182651 Lupinus albus HOM05D007441 ORTHO05D009501 1.5e-40 170.2 174 51.7
THA.LOC104809273 Tarenaya hassleriana HOM05D007441 ORTHO05D009501 1.5e-40 170.2 172 51.7
arahy.Tifrunner.gnm1.ann1.DR4P4T Arachis hypogaea HOM05D007441 ORTHO05D009501 1.9e-40 169.9 166 52.4
CANSAT80G2614 Cannabis sativa HOM05D007441 ORTHO05D009501 1.9e-40 169.9 144 62.5
Actinidia19093 Actinidia chinensis HOM05D007441 ORTHO05D009501 3.3e-40 169.1 139 60.4
arahy.Tifrunner.gnm1.ann1.01HJP6 Arachis hypogaea HOM05D007441 ORTHO05D009501 4.3e-40 168.7 166 51.8
CSS0037538 Camellia sinensis var. sinensis HOM05D007441 ORTHO05D009501 4.3e-40 168.7 144 58.3
ECA247G2439 Erigeron canadensis HOM05D007441 ORTHO05D009501 4.3e-40 168.7 137 58.4
Medtr4g106640 Medicago truncatula HOM05D007441 ORTHO05D009501 4.3e-40 168.7 171 53.8
AUR62008240 Chenopodium quinoa HOM05D007441 ORTHO05D009501 5.6e-40 168.3 139 58.3
AUR62030992 Chenopodium quinoa HOM05D007441 ORTHO05D009501 1.3e-39 167.2 139 58.3
HanXRQChr02g0037211 Helianthus annuus HOM05D007441 ORTHO05D009501 2.1e-39 166.4 173 47.4
Potri.015G073900 Populus trichocarpa HOM05D007441 ORTHO05D009501 2.1e-39 166.4 162 55.6
Atru.chr9.2436 Acer truncatum HOM05D007441 ORTHO05D009501 2.8e-39 166.0 176 51.1
Ca_21905_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 3.7e-39 165.6 140 60.0
Ca_21923_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 3.7e-39 165.6 140 60.0
Hund02733 Selenicereus undatus HOM05D007441 ORTHO05D009501 4.8e-39 165.2 139 56.8
Phvul.003G198700 Phaseolus vulgaris HOM05D007441 ORTHO05D009501 8.1e-39 164.5 139 56.8
Aqoxy3G03040 Aquilegia oxysepala HOM05D007441 ORTHO05D009501 1.4e-38 163.7 145 57.2
PSO832G4588 Papaver somniferum HOM05D007441 ORTHO05D009501 5.3e-38 161.8 139 56.1
Solyc03g114120.3 Solanum lycopersicum HOM05D007441 ORTHO05D009501 5.3e-38 161.8 172 51.7
Sopen03g033180 Solanum pennellii HOM05D007441 ORTHO05D009501 5.3e-38 161.8 172 51.7
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 1.5e-37 160.2 167 49.7
PGSC0003DMG400024487 Solanum tuberosum HOM05D007441 ORTHO05D009501 1.5e-37 160.2 172 51.2
Carub.0001s2566 Capsella rubella HOM05D007441 ORTHO05D009501 5.8e-37 158.3 169 49.1
Oeu016356.1 Olea europaea HOM05D007441 ORTHO05D009501 1.3e-36 157.1 173 49.7
CARHR026680 Cardamine hirsuta HOM05D007441 ORTHO05D009501 1.7e-36 156.8 176 47.7
Psat4g057000 Pisum sativum HOM05D007441 ORTHO05D009501 2.2e-36 156.4 139 56.1
SalBow5G3166 Salvia bowleyana HOM05D007441 ORTHO05D009501 4.9e-36 155.2 133 55.6
AT1G24450 Arabidopsis thaliana HOM05D007441 ORTHO05D009501 8.4e-36 154.5 174 47.7
MSTRG.23109 Avicennia marina HOM05D007441 ORTHO05D009501 1.4e-35 153.7 178 47.8
Sp1g23350 Schrenkiella parvula HOM05D007441 ORTHO05D009501 1.4e-35 153.7 169 46.2
AL1G40490 Arabidopsis lyrata HOM05D007441 ORTHO05D009501 1.9e-35 153.3 139 54.7
A09p38770 Brassica napus HOM05D007441 ORTHO05D009501 1.9e-35 153.3 142 53.5
BraA09t39385Z Brassica rapa HOM05D007441 ORTHO05D009501 1.9e-35 153.3 142 53.5
SGA_v2.0_scaffold90G27976 Striga asiatica HOM05D007441 ORTHO05D009501 1.9e-35 153.3 137 56.9
BolC5t31303H Brassica oleracea HOM05D007441 ORTHO05D009501 4.2e-35 152.1 171 46.2
C05p25830 Brassica napus HOM05D007441 ORTHO05D009501 5.5e-35 151.8 171 46.8
BcaC05g26717 Brassica carinata HOM05D007441 ORTHO05D009501 7.1e-35 151.4 171 47.4
CAN.G4872.1 Capsicum annuum HOM05D007441 ORTHO05D009501 1.2e-34 150.6 191 46.1
EL10Ac5g10787 Beta vulgaris HOM05D007441 ORTHO05D009501 6.0e-34 148.3 124 56.5
Thhalv10008862m.g Eutrema salsugineum HOM05D007441 ORTHO05D009501 3.0e-33 146.0 173 44.5
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 3.0e-33 146.0 157 49.7
Rhsim12G0163200 Rhododendron simsii HOM05D007441 ORTHO05D009501 1.1e-32 144.1 138 53.6
CAN.G781.35 Capsicum annuum HOM05D007441 ORTHO05D009501 1.5e-32 143.7 128 56.2
DCAR_031307 Daucus carota HOM05D007441 ORTHO05D009501 3.3e-32 142.5 119 58.8
Aa31LG7G9580 Aethionema arabicum HOM05D007441 ORTHO05D009501 5.7e-32 141.7 169 47.3
TPR.G37479 Trifolium pratense HOM05D007441 ORTHO05D009501 5.7e-32 141.7 143 49.0
Haze_07488 Corylus avellana HOM05D007441 ORTHO05D009501 2.1e-31 139.8 147 53.7
AUR62029952 Chenopodium quinoa HOM05D007441 ORTHO05D009501 3.1e-30 136.0 124 51.6
BcaC05g26720 Brassica carinata HOM05D007441 ORTHO05D009501 1.5e-29 133.7 171 43.3
MBI15_g31106_MAGBIO Magnolia biondii HOM05D007441 ORTHO05D009501 7.6e-29 131.3 111 57.7
Peaxi162Scf00017g00269 Petunia axillaris HOM05D007441 ORTHO05D009501 3.8e-28 129.0 116 54.3
ATR1149G031 Amborella trichopoda HOM05D007441 ORTHO05D009501 3.2e-27 125.9 142 47.2
BcaC05g26525 Brassica carinata HOM05D007441 ORTHO05D009501 1.3e-25 120.6 112 50.9
Dinv09163 Davidia involucrata HOM05D007441 ORTHO05D009501 8.7e-25 117.9 128 50.0
BcaC06g35265 Brassica carinata HOM05D007441 ORTHO05D009501 4.3e-24 115.5 109 52.3
Zm00001eb210540 Zea mays HOM05D007441 ORTHO05D009501 5.7e-24 115.2 152 42.1
C07p18070 Brassica napus HOM05D007441 ORTHO05D009501 2.2e-23 113.2 109 51.4
Actinidia34944 Actinidia chinensis HOM05D007441 ORTHO05D009501 2.9e-20 102.8 79 57.0
BolC7t42316H Brassica oleracea HOM05D007441 ORTHO05D009501 1.9e-19 100.1 108 46.3
AUR62039786 Chenopodium quinoa HOM05D007441 ORTHO05D009501 2.5e-19 99.8 119 47.1
CAN.G781.34 Capsicum annuum HOM05D007441 ORTHO05D009501 2.0e-16 90.1 80 55.0
AUR62040474 Chenopodium quinoa HOM05D007441 ORTHO05D009501 7.4e-16 88.2 124 40.3
Medtr4g079220 Medicago truncatula HOM05D007441 ORTHO05D009501 8.2e-15 84.7 101 46.5
COL.COLO4_16923 Corchorus olitorius HOM05D007441 ORTHO05D009501 1.4e-14 84.0 90 42.2
SMO118G0028 Selaginella moellendorffii HOM05D007441 ORTHO05D009501 2.4e-14 83.2 123 39.8
Os03g0854400 Oryza sativa ssp. japonica HOM05D007441 ORTHO05D009501 1.5e-13 80.5 139 37.4
Migut.I00040 Erythranthe guttata HOM05D007441 ORTHO05D009501 2.9e-12 76.3 59 55.9
HPP92_004711 Vanilla planifolia HOM05D007441 ORTHO05D009501 3.8e-12 75.9 93 41.9
SEGI_24388 Sequoiadendron giganteum HOM05D007441 ORTHO05D009501 1.9e-11 73.6 109 37.6
Nn1g06648 Nelumbo nucifera HOM05D007441 ORTHO05D272115 1.1e-06 57.8 33 84.8


User provided reference genes

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