Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22835 Nelumbo nucifera HOM05D001101 ORTHO05D000893 7.4e-40 166.8 86 100.0
Nn4g22843 Nelumbo nucifera HOM05D001101 ORTHO05D000893 3.5e-37 157.9 81 100.0
RcHm_v2.0_Chr4g0444161 Rosa chinensis HOM05D001101 ORTHO05D000893 1.8e-17 92.4 72 62.5
TAR629G2171 Trochodendron aralioides HOM05D001101 ORTHO05D000893 5.2e-17 90.9 78 57.7
Dinv31018 Davidia involucrata HOM05D001101 ORTHO05D000893 1.2e-16 89.7 81 55.6
Dinv31084 Davidia involucrata HOM05D001101 ORTHO05D000893 1.2e-16 89.7 81 55.6
Haze_12150 Corylus avellana HOM05D001101 ORTHO05D000893 2.0e-16 89.0 77 54.5
FAN17G0312 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.0e-16 89.0 73 60.3
Manes.05G088100 Manihot esculenta HOM05D001101 ORTHO05D000893 2.0e-16 89.0 80 51.2
Manes.05G088200 Manihot esculenta HOM05D001101 ORTHO05D000893 2.0e-16 89.0 80 51.2
GSVIVG01020208001 Vitis vinifera HOM05D001101 ORTHO05D000893 2.0e-16 89.0 76 53.9
Cfa009112 Carpinus fangiana HOM05D001101 ORTHO05D000893 9.8e-16 86.7 77 54.5
Manes.05G088250 Manihot esculenta HOM05D001101 ORTHO05D000893 9.8e-16 86.7 80 50.0
CiPaw.05G147500 Carya illinoinensis HOM05D001101 ORTHO05D000893 2.2e-15 85.5 77 55.8
FvH4_4g34820 Fragaria vesca HOM05D001101 ORTHO05D000893 2.8e-15 85.1 75 57.3
Atru.chr11.1996 Acer truncatum HOM05D001101 ORTHO05D000893 3.7e-15 84.7 69 52.2
Ah.02g129810 Amaranthus hybridus HOM05D001101 ORTHO05D000893 3.7e-15 84.7 77 51.9
Duzib251G0718 Durio zibethinus HOM05D001101 ORTHO05D000893 4.8e-15 84.3 80 50.0
MD16G1089600 Malus domestica HOM05D001101 ORTHO05D000893 8.3e-15 83.6 78 53.8
FAN07G0286 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.1e-14 83.2 73 56.2
Ciclev10031709m.g Citrus clementina HOM05D001101 ORTHO05D000893 1.4e-14 82.8 76 51.3
FAN12G2180 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.4e-14 82.8 81 54.3
Prupe.1G256400 Prunus persica HOM05D001101 ORTHO05D000893 1.4e-14 82.8 78 53.8
Lj3C23T3 Lonicera japonica HOM05D001101 ORTHO05D000893 2.4e-14 82.0 63 55.6
Cpa.g.sc69.5 Carica papaya HOM05D001101 ORTHO05D000893 3.1e-14 81.6 80 52.5
DCAR_031090 Daucus carota HOM05D001101 ORTHO05D000893 5.4e-14 80.9 84 56.0
MD13G1089400 Malus domestica HOM05D001101 ORTHO05D000893 1.6e-13 79.3 78 50.0
COL.COLO4_19522 Corchorus olitorius HOM05D001101 ORTHO05D000893 2.0e-13 79.0 68 55.9
PSO080G0001 Papaver somniferum HOM05D001101 ORTHO05D000893 2.0e-13 79.0 78 53.8
PSO384G1315 Papaver somniferum HOM05D001101 ORTHO05D000893 2.0e-13 79.0 78 53.8
EL10Ac6g13648 Beta vulgaris HOM05D001101 ORTHO05D000893 3.5e-13 78.2 79 48.1
arahy.Tifrunner.gnm1.ann1.JM0Y8L Arachis hypogaea HOM05D000027 ORTHO05D000066 4.5e-13 77.8 76 47.4
arahy.Tifrunner.gnm1.ann1.97U3QM Arachis hypogaea HOM05D001101 ORTHO05D000893 5.9e-13 77.4 76 47.4
arahy.Tifrunner.gnm1.ann1.BGI759 Arachis hypogaea HOM05D001101 ORTHO05D000893 5.9e-13 77.4 76 47.4
AUR62005350 Chenopodium quinoa HOM05D001101 ORTHO05D000893 5.9e-13 77.4 81 48.1
Actinidia32589 Actinidia chinensis HOM05D001101 ORTHO05D000893 7.7e-13 77.0 64 62.5
Thecc.02G246100 Theobroma cacao HOM05D001101 ORTHO05D000893 7.7e-13 77.0 78 47.4
vmacro16267 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 1.0e-12 76.6 72 50.0
PGR102G2733 Punica granatum HOM05D001101 ORTHO05D000893 1.3e-12 76.3 74 50.0
Rhsim12G0122100 Rhododendron simsii HOM05D001101 ORTHO05D000893 2.3e-12 75.5 63 52.4
THA.LOC104822132 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 2.3e-12 75.5 76 50.0
CSS0003474 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 2.9e-12 75.1 68 51.5
CSS0010320 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 2.9e-12 75.1 74 47.3
CSS0017099 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 5.0e-12 74.3 74 45.9
Ca_22749_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 5.0e-12 74.3 74 54.1
Medtr8g063700 Medicago truncatula HOM05D001101 ORTHO05D000893 1.1e-11 73.2 73 53.4
QL03p061872 Quercus lobata HOM05D001101 ORTHO05D000893 1.1e-11 73.2 56 51.8
TPR.G31967 Trifolium pratense HOM05D001101 ORTHO05D000893 1.1e-11 73.2 73 45.2
AUR62014002 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.5e-11 72.8 81 48.1
Hma1.2p1_0867F.1_g230380 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 1.5e-11 72.8 64 56.2
Psat4g127640 Pisum sativum HOM05D001101 ORTHO05D000893 1.5e-11 72.8 56 55.4
CANSAT01G2699 Cannabis sativa HOM05D001101 ORTHO05D000893 1.9e-11 72.4 80 46.2
Thhalv10007807m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 2.5e-11 72.0 74 44.6
TWI18G1371 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 2.5e-11 72.0 82 46.3
Lj4g0015107 Lotus japonicus HOM05D001101 ORTHO05D000893 3.3e-11 71.6 53 60.4
Actinidia15029 Actinidia chinensis HOM05D001101 ORTHO05D000893 5.5e-11 70.9 64 54.7
AT1G23890 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 7.2e-11 70.5 72 44.4
CARHR024290 Cardamine hirsuta HOM05D001101 ORTHO05D000893 7.2e-11 70.5 65 44.6
Dinv24883 Davidia involucrata HOM05D001101 ORTHO05D000893 7.2e-11 70.5 51 60.8
Sp1g21240 Schrenkiella parvula HOM05D001101 ORTHO05D000893 7.2e-11 70.5 74 44.6
PGSC0003DMG400004127 Solanum tuberosum HOM05D001101 ORTHO05D000893 1.6e-10 69.3 64 46.9
AL1G37640 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 2.1e-10 68.9 72 43.1
FAN22G1327 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.8e-10 68.6 47 63.8
Solyc05g005770.3 Solanum lycopersicum HOM05D001101 ORTHO05D000893 4.7e-10 67.8 77 41.6
Lsat_1_v5_gn_4_6680 Lactuca sativa HOM05D001101 ORTHO05D000893 8.0e-10 67.0 80 50.0
Hund05974 Selenicereus undatus HOM05D001101 ORTHO05D000893 8.0e-10 67.0 78 38.5
BcaB07g32365 Brassica carinata HOM05D001101 ORTHO05D000893 1.0e-09 66.6 74 43.2
BraA09t39584Z Brassica rapa HOM05D001101 ORTHO05D000893 1.4e-09 66.2 74 43.2
MBI15_g31107_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 1.4e-09 66.2 65 56.9
BcaB07g32363 Brassica carinata HOM05D001101 ORTHO05D000893 1.8e-09 65.9 74 43.2
A09p40950 Brassica napus HOM05D001101 ORTHO05D000893 1.8e-09 65.9 63 46.0
C05p23080 Brassica napus HOM05D001101 ORTHO05D000893 1.8e-09 65.9 74 43.2
BolC5t31006H Brassica oleracea HOM05D001101 ORTHO05D000893 1.8e-09 65.9 74 43.2
Aa31LG7G7760 Aethionema arabicum HOM05D001101 ORTHO05D000893 2.3e-09 65.5 74 40.5
Carub.0001s2338 Capsella rubella HOM05D001101 ORTHO05D000893 2.3e-09 65.5 76 42.1
Sopen05g001770 Solanum pennellii HOM05D001101 ORTHO05D000893 2.3e-09 65.5 77 40.3
HanXRQChr04g0103691 Helianthus annuus HOM05D001101 ORTHO05D000893 6.8e-09 63.9 61 54.1
Sabra04G0058200 Salix brachista HOM05D001101 ORTHO05D000893 6.8e-09 63.9 74 48.6
Peaxi162Scf00421g00119 Petunia axillaris HOM05D001101 ORTHO05D000893 8.9e-09 63.5 63 42.9
CAN.G205.9 Capsicum annuum HOM05D001101 ORTHO05D000893 1.2e-08 63.2 76 39.5
Aqoxy3G03039 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 1.5e-08 62.8 87 44.8
Nitab4.5_0000052g0300 Nicotiana tabacum HOM05D001101 ORTHO05D000893 1.5e-08 62.8 79 35.4
Oeu028909.1 Olea europaea HOM05D001101 ORTHO05D000893 1.5e-08 62.8 83 42.2
Oeu001671.1 Olea europaea HOM05D001101 ORTHO05D000893 2.0e-08 62.4 72 48.6
ECA234G3646 Erigeron canadensis HOM05D000041 ORTHO05D000452 5.7e-08 60.8 69 44.9
Phvul.003G053200 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 5.7e-08 60.8 70 45.7
Nitab4.5_0008887g0040 Nicotiana tabacum HOM05D001101 ORTHO05D000893 1.3e-07 59.7 64 35.9
Potri.004G087300 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.3e-07 59.7 73 45.2
Potri.017G129500 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.7e-07 59.3 71 46.5
VMungo0251G1563 Vigna mungo HOM05D001101 ORTHO05D000893 2.8e-07 58.5 71 42.3
Glyma.08G288900 Glycine max HOM05D001101 ORTHO05D000893 3.7e-07 58.2 70 40.0
SEGI_14575 Sequoiadendron giganteum HOM05D001101 ORTHO05D000893 2.4e-06 55.5 74 37.8
ATR1149G146 Amborella trichopoda HOM05D001101 ORTHO05D000893 3.1e-06 55.1 79 35.4
SalBow2G1559 Salvia bowleyana HOM05D001101 ORTHO05D000893 5.4e-06 54.3 74 41.9
Nitab4.5_0000052g0350 Nicotiana tabacum HOM05D001101 ORTHO05D000893 7.0e-06 53.9 54 42.6
Os08g0414600 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 9.2e-06 53.5 64 42.2


User provided reference genes

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